Analysis of interatomic Contacts of Structural Units in PDB entry:
1J0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J0J entry

There are 2 chains in PDB entry 1J0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 588
B
 MET 1TRP 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 1J0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
121 125Right-handed 310
Helix 3
3
A
129 135Right-handed 310
Helix 4
4
A
141 145Right-handed 310
Helix 5
5
A
174 189Right-handed alpha
Helix 6
6
A
221 235Right-handed alpha
Helix 7
7
A
252 262Right-handed alpha
Helix 8
8
A
263 265Right-handed 310
Helix 9
9
A
267 271Right-handed 310
Helix 10
10
A
302 321Right-handed alpha
Helix 11
11
A
329 333Right-handed 310
Helix 12
12
A
334 349Right-handed alpha
Helix 13
13
A
362 366Right-handed 310
Helix 14
14
A
376 388Right-handed alpha
Helix 15
15
A
393 406Right-handed alpha
Helix 16
16
A
409 414Right-handed alpha
Helix 17
17
A
427 432Right-handed alpha
Helix 18
18
A
435 449Right-handed alpha
Helix 19
19
A
458 462Right-handed 310
Helix 20
20
A
469 473Right-handed 310
Helix 21
21
A
478 482Right-handed 310
Helix 22
22
A
483 500Right-handed alpha
Helix 23
23
A
501 506Right-handed alpha
Helix 24
24
B
2 6Right-handed 310
Helix 25
25
B
11 13Right-handed 310
Helix 26
26
B
110 114Right-handed 310
Helix 27
27
B
121 125Right-handed 310
Helix 28
28
B
129 135Right-handed 310
Helix 29
29
B
141 145Right-handed 310
Helix 30
30
B
149 153Right-handed 310
Helix 31
31
B
174 189Right-handed alpha
Helix 32
32
B
221 235Right-handed alpha
Helix 33
33
B
252 261Right-handed alpha
Helix 34
34
B
262 265Right-handed 310
Helix 35
35
B
267 271Right-handed 310
Helix 36
36
B
302 321Right-handed alpha
Helix 37
37
B
329 333Right-handed 310
Helix 38
38
B
334 349Right-handed alpha
Helix 39
39
B
362 366Right-handed 310
Helix 40
40
B
376 387Right-handed alpha
Helix 41
41
B
393 407Right-handed alpha
Helix 42
42
B
409 414Right-handed alpha
Helix 43
43
B
427 432Right-handed alpha
Helix 44
44
B
435 447Right-handed alpha
Helix 45
45
B
469 473Right-handed 310
Helix 46
46
B
483 500Right-handed alpha
Helix 47
47
B
500 506Right-handed alpha
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There are 14 sheets in PDB entry 1J0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
22 30anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
55 64anti-parallel
Strand 5
A
36 42anti-parallel
Strand 6
A
82 90anti-parallel
Strand 7
A
93 98anti-parallel
Strand 8
A
101 103anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
22 30anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
55 64anti-parallel
Strand 5
A
36 42anti-parallel
Strand 6
A
82 90anti-parallel
Strand 7
A
115 117anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
51 52anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
353 356parallel
Strand 3
A
324 327parallel
Strand 4
A
238 243parallel
Strand 5
A
192 195parallel
Strand 6
A
137 140parallel
Strand 7
A
454 456parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
211 215anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 511first strand
Strand 2
A
519 525anti-parallel
Strand 3
A
531 536anti-parallel
Strand 4
A
580 587anti-parallel
Strand 5
A
553 557anti-parallel
Strand 6
A
563 565anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 545first strand
Strand 2
A
572 575anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
55 64anti-parallel
Strand 5
B
36 42anti-parallel
Strand 6
B
82 89anti-parallel
Strand 7
B
96 98anti-parallel
Strand 8
B
101 103anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
55 64anti-parallel
Strand 5
B
36 42anti-parallel
Strand 6
B
82 89anti-parallel
Strand 7
B
115 117anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 374first strand
Strand 2
B
353 356parallel
Strand 3
B
324 327parallel
Strand 4
B
238 243parallel
Strand 5
B
192 195parallel
Strand 6
B
137 140parallel
Strand 7
B
452 456parallel
Strand 8
B
417 419parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
B
211 215anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 289first strand
Strand 2
B
292 296anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
507 510first strand
Strand 2
B
519 525anti-parallel
Strand 3
B
530 536anti-parallel
Strand 4
B
580 587anti-parallel
Strand 5
B
553 557anti-parallel
Strand 6
B
563 565anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
542 545first strand
Strand 2
B
572 575anti-parallel
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