Analysis of interatomic Contacts of Structural Units in PDB entry:
1J0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J0Y entry

There are 4 chains in PDB entry 1J0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1TRP 516
B
 ALA 1TRP 516
C
 ALA 1TRP 516
D
 ALA 1TRP 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 1J0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 26Right-handed alpha
Helix 2
2
A
27 41Right-handed alpha
Helix 3
3
A
52 56Right-handed alpha
Helix 4
4
A
65 79Right-handed alpha
Helix 5
5
A
104 111Right-handed 310
Helix 6
6
A
134 154Right-handed alpha
Helix 7
7
A
155 160Right-handed 310
Helix 8
8
A
168 172Right-handed 310
Helix 9
9
A
196 212Right-handed alpha
Helix 10
10
A
213 222Right-handed alpha
Helix 11
11
A
227 231Right-handed 310
Helix 12
12
A
236 243Right-handed alpha
Helix 13
13
A
244 246Right-handed 310
Helix 14
14
A
247 281Right-handed alpha
Helix 15
15
A
305 309Right-handed 310
Helix 16
16
A
312 324Right-handed alpha
Helix 17
17
A
345 361Right-handed alpha
Helix 18
18
A
374 388Right-handed alpha
Helix 19
19
A
397 403Right-handed alpha
Helix 20
20
A
404 415Right-handed alpha
Helix 21
21
A
443 447Right-handed 310
Helix 22
22
B
1 5Right-handed 310
Helix 23
23
B
21 26Right-handed alpha
Helix 24
24
B
27 41Right-handed alpha
Helix 25
25
B
52 56Right-handed alpha
Helix 26
26
B
65 78Right-handed alpha
Helix 27
27
B
104 111Right-handed 310
Helix 28
28
B
134 154Right-handed alpha
Helix 29
29
B
155 160Right-handed 310
Helix 30
30
B
168 172Right-handed 310
Helix 31
31
B
196 212Right-handed alpha
Helix 32
32
B
213 222Right-handed alpha
Helix 33
33
B
227 231Right-handed 310
Helix 34
34
B
236 243Right-handed alpha
Helix 35
35
B
244 246Right-handed 310
Helix 36
36
B
247 281Right-handed alpha
Helix 37
37
B
305 309Right-handed 310
Helix 38
38
B
312 323Right-handed alpha
Helix 39
39
B
345 361Right-handed alpha
Helix 40
40
B
374 388Right-handed alpha
Helix 41
41
B
398 403Right-handed alpha
Helix 42
42
B
404 415Right-handed alpha
Helix 43
43
B
443 447Right-handed 310
Helix 44
44
C
1 5Right-handed 310
Helix 45
45
C
21 26Right-handed alpha
Helix 46
46
C
27 41Right-handed alpha
Helix 47
47
C
52 56Right-handed alpha
Helix 48
48
C
65 79Right-handed alpha
Helix 49
49
C
104 111Right-handed 310
Helix 50
50
C
134 154Right-handed alpha
Helix 51
51
C
155 160Right-handed 310
Helix 52
52
C
168 172Right-handed 310
Helix 53
53
C
196 212Right-handed alpha
Helix 54
54
C
213 222Right-handed alpha
Helix 55
55
C
227 231Right-handed 310
Helix 56
56
C
236 243Right-handed alpha
Helix 57
57
C
244 246Right-handed 310
Helix 58
58
C
247 281Right-handed alpha
Helix 59
59
C
305 309Right-handed 310
Helix 60
60
C
312 324Right-handed alpha
Helix 61
61
C
345 361Right-handed alpha
Helix 62
62
C
374 388Right-handed alpha
Helix 63
63
C
397 403Right-handed alpha
Helix 64
64
C
404 415Right-handed alpha
Helix 65
65
C
443 447Right-handed 310
Helix 66
66
D
1 5Right-handed 310
Helix 67
67
D
21 26Right-handed alpha
Helix 68
68
D
27 41Right-handed alpha
Helix 69
69
D
52 56Right-handed alpha
Helix 70
70
D
65 78Right-handed alpha
Helix 71
71
D
104 111Right-handed 310
Helix 72
72
D
134 154Right-handed alpha
Helix 73
73
D
155 160Right-handed 310
Helix 74
74
D
168 172Right-handed 310
Helix 75
75
D
196 212Right-handed alpha
Helix 76
76
D
213 222Right-handed alpha
Helix 77
77
D
227 231Right-handed 310
Helix 78
78
D
236 243Right-handed alpha
Helix 79
79
D
244 246Right-handed 310
Helix 80
80
D
247 281Right-handed alpha
Helix 81
81
D
304 309Right-handed alpha
Helix 82
82
D
312 324Right-handed alpha
Helix 83
83
D
345 361Right-handed alpha
Helix 84
84
D
374 388Right-handed alpha
Helix 85
85
D
397 403Right-handed alpha
Helix 86
86
D
404 415Right-handed alpha
Helix 87
87
D
443 447Right-handed 310
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There are 18 sheets in PDB entry 1J0Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
43 51parallel
Strand 3
A
81 87parallel
Strand 4
A
163 165parallel
Strand 5
A
284 287parallel
Strand 6
A
326 329parallel
Strand 7
A
364 367parallel
Strand 8
A
392 395parallel
Strand 9
A
12 16parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
125 126anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 461first strand
Strand 2
A
466 474anti-parallel
Strand 3
A
419 427anti-parallel
Strand 4
A
511 515parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
436 441anti-parallel
Strand 3
A
479 486anti-parallel
Strand 4
A
492 495anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
436 441anti-parallel
Strand 3
A
479 486anti-parallel
Strand 4
A
500 502anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
43 51parallel
Strand 3
B
81 87parallel
Strand 4
B
163 165parallel
Strand 5
B
284 287parallel
Strand 6
B
326 329parallel
Strand 7
B
364 367parallel
Strand 8
B
392 395parallel
Strand 9
B
12 16parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
125 126anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 461first strand
Strand 2
B
466 474anti-parallel
Strand 3
B
419 427anti-parallel
Strand 4
B
511 515parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 457first strand
Strand 2
B
436 441anti-parallel
Strand 3
B
479 486anti-parallel
Strand 4
B
492 495anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 457first strand
Strand 2
B
436 441anti-parallel
Strand 3
B
479 486anti-parallel
Strand 4
B
500 502anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
43 51parallel
Strand 3
C
81 87parallel
Strand 4
C
163 165parallel
Strand 5
C
284 287parallel
Strand 6
C
326 329parallel
Strand 7
C
364 367parallel
Strand 8
C
392 395parallel
Strand 9
C
12 16parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 119first strand
Strand 2
C
125 126anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
492 495first strand
Strand 2
C
479 486anti-parallel
Strand 3
C
500 502anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
492 495first strand
Strand 2
C
479 486anti-parallel
Strand 3
C
436 441anti-parallel
Strand 4
C
456 460anti-parallel
Strand 5
C
467 474anti-parallel
Strand 6
C
419 427anti-parallel
Strand 7
C
511 515parallel
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There are 9 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
43 51parallel
Strand 3
D
81 87parallel
Strand 4
D
163 165parallel
Strand 5
D
284 287parallel
Strand 6
D
326 330parallel
Strand 7
D
364 367parallel
Strand 8
D
392 395parallel
Strand 9
D
12 16parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 119first strand
Strand 2
D
125 126anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
492 495first strand
Strand 2
D
479 486anti-parallel
Strand 3
D
500 502anti-parallel
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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
492 495first strand
Strand 2
D
479 486anti-parallel
Strand 3
D
436 441anti-parallel
Strand 4
D
456 461anti-parallel
Strand 5
D
466 474anti-parallel
Strand 6
D
419 427anti-parallel
Strand 7
D
511 515parallel
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