Analysis of interatomic Contacts of Structural Units in PDB entry:
1J19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J19 entry

There are 2 chains in PDB entry 1J19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ALA 317
B
 ARG 404LEU 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1J19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 38Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
88 93Right-handed alpha
Helix 4
4
A
95 112Right-handed alpha
Helix 5
5
A
118 135Right-handed alpha
Helix 6
6
A
154 161Right-handed alpha
Helix 7
7
A
164 178Right-handed alpha
Helix 8
8
A
183 196Right-handed alpha
Helix 9
9
A
273 294Right-handed alpha
Helix 10
10
A
299 312Right-handed alpha
Helix 11
11
B
412 416Right-handed 310
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There are 2 sheets in PDB entry 1J19. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
5 10anti-parallel
Strand 3
A
76 82parallel
Strand 4
A
45 50anti-parallel
Strand 5
A
56 58anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
224 229anti-parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
204 210anti-parallel
Strand 5
A
267 270anti-parallel
Strand 6
A
254 259anti-parallel
Strand 7
A
245 251anti-parallel
Strand 8
B
407 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il