Analysis of interatomic Contacts of Structural Units in PDB entry:
1J1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J1E entry

There are 6 chains in PDB entry 1J1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 161
B
 THR 203ASN 271
C
 ALA 35ARG 162
D
 MET 1GLU 161
E
 GLN 202LYS 276
F
 LYS 40TRP 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1J1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 11Right-handed alpha
Helix 2
2
A
13 28Right-handed alpha
Helix 3
3
A
37 46Right-handed alpha
Helix 4
4
A
47 49Right-handed 310
Helix 5
5
A
53 63Right-handed alpha
Helix 6
6
A
73 84Right-handed alpha
Helix 7
7
A
93 105Right-handed alpha
Helix 8
8
A
114 124Right-handed alpha
Helix 9
9
A
129 141Right-handed alpha
Helix 10
10
A
150 158Right-handed alpha
Helix 11
11
B
203 222Right-handed alpha
Helix 12
12
B
225 271Right-handed alpha
Helix 13
13
C
42 80Right-handed alpha
Helix 14
14
C
84 88Right-handed 310
Helix 15
15
C
89 136Right-handed alpha
Helix 16
16
C
150 160Right-handed alpha
Helix 17
17
D
2 10Right-handed alpha
Helix 18
18
D
13 29Right-handed alpha
Helix 19
19
D
37 48Right-handed alpha
Helix 20
20
D
53 65Right-handed alpha
Helix 21
21
D
73 86Right-handed alpha
Helix 22
22
D
93 105Right-handed alpha
Helix 23
23
D
114 124Right-handed alpha
Helix 24
24
D
129 141Right-handed alpha
Helix 25
25
D
149 156Right-handed alpha
Helix 26
26
E
202 222Right-handed alpha
Helix 27
27
E
225 274Right-handed alpha
Helix 28
28
F
42 81Right-handed alpha
Helix 29
29
F
89 136Right-handed alpha
Helix 30
30
F
150 160Right-handed alpha
Helix 31
31
F
160 189Right-handed alpha
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There are 2 sheets in PDB entry 1J1E. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
147 149anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 113first strand
Strand 2
D
147 148anti-parallel
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