Analysis of interatomic Contacts of Structural Units in PDB entry:
1J1N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J1N entry

There are 2 chains in PDB entry 1J1N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1ASN 492
B
 LYS 1ASN 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 1J1N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 40Right-handed alpha
Helix 2
2
A
53 63Right-handed alpha
Helix 3
3
A
76 86Right-handed alpha
Helix 4
4
A
92 100Right-handed alpha
Helix 5
5
A
100 110Right-handed alpha
Helix 6
6
A
110 118Right-handed alpha
Helix 7
7
A
143 149Right-handed alpha
Helix 8
8
A
156 170Right-handed alpha
Helix 9
9
A
189 194Right-handed alpha
Helix 10
10
A
195 199Right-handed 310
Helix 11
11
A
220 223Right-handed 310
Helix 12
12
A
224 240Right-handed alpha
Helix 13
13
A
250 252Right-handed 310
Helix 14
14
A
253 261Right-handed alpha
Helix 15
15
A
271 276Right-handed alpha
Helix 16
16
A
276 281Right-handed alpha
Helix 17
17
A
325 336Right-handed alpha
Helix 18
18
A
338 348Right-handed alpha
Helix 19
19
A
364 370Right-handed alpha
Helix 20
20
A
373 380Right-handed alpha
Helix 21
21
A
392 398Right-handed alpha
Helix 22
22
A
401 415Right-handed alpha
Helix 23
23
A
427 454Right-handed alpha
Helix 24
24
A
458 473Right-handed alpha
Helix 25
25
A
474 491Right-handed alpha
Helix 26
26
B
29 40Right-handed alpha
Helix 27
27
B
53 63Right-handed alpha
Helix 28
28
B
76 86Right-handed alpha
Helix 29
29
B
92 100Right-handed alpha
Helix 30
30
B
100 110Right-handed alpha
Helix 31
31
B
110 118Right-handed alpha
Helix 32
32
B
143 149Right-handed alpha
Helix 33
33
B
156 170Right-handed alpha
Helix 34
34
B
189 194Right-handed alpha
Helix 35
35
B
195 199Right-handed 310
Helix 36
36
B
220 223Right-handed 310
Helix 37
37
B
224 240Right-handed alpha
Helix 38
38
B
250 252Right-handed 310
Helix 39
39
B
253 261Right-handed alpha
Helix 40
40
B
271 276Right-handed alpha
Helix 41
41
B
276 281Right-handed alpha
Helix 42
42
B
325 336Right-handed alpha
Helix 43
43
B
338 348Right-handed alpha
Helix 44
44
B
364 370Right-handed alpha
Helix 45
45
B
373 380Right-handed alpha
Helix 46
46
B
392 398Right-handed alpha
Helix 47
47
B
401 415Right-handed alpha
Helix 48
48
B
427 454Right-handed alpha
Helix 49
49
B
458 473Right-handed alpha
Helix 50
50
B
474 491Right-handed alpha
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There are 10 sheets in PDB entry 1J1N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
11 19parallel
Strand 3
A
23 24anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
11 19parallel
Strand 3
A
70 73parallel
Strand 4
A
316 319anti-parallel
Strand 5
A
127 130anti-parallel
Strand 6
A
389 390parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
264 270parallel
Strand 3
A
137 142anti-parallel
Strand 4
A
290 293anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
217 219anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
360 363anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
11 19parallel
Strand 3
B
23 24anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
11 19parallel
Strand 3
B
70 73parallel
Strand 4
B
316 319anti-parallel
Strand 5
B
127 130anti-parallel
Strand 6
B
389 390parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
264 270parallel
Strand 3
B
137 142anti-parallel
Strand 4
B
290 293anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
217 219anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 357first strand
Strand 2
B
360 363anti-parallel
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