Analysis of interatomic Contacts of Structural Units in PDB entry:
1J1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J1T entry

There is 1 chain in PDB entry 1J1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ASN 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 1J1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
37 42Right-handed alpha
Helix 3
3
A
59 62Right-handed 310
Helix 4
4
A
64 66Right-handed 310
Helix 5
5
A
203 214Right-handed alpha
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There are 2 sheets in PDB entry 1J1T. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
50 57anti-parallel
Strand 3
A
180 188anti-parallel
Strand 4
A
85 92anti-parallel
Strand 5
A
98 105anti-parallel
Strand 6
A
121 129anti-parallel
Strand 7
A
135 144anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
33 36anti-parallel
Strand 3
A
219 232anti-parallel
Strand 4
A
68 80anti-parallel
Strand 5
A
148 156anti-parallel
Strand 6
A
159 164anti-parallel
Strand 7
A
167 172anti-parallel
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