Analysis of interatomic Contacts of Structural Units in PDB entry:
1J1W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J1W entry

There are 4 chains in PDB entry 1J1W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LEU 740
B
 THR 3LEU 740
C
 THR 3LEU 740
D
 THR 3LEU 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are136 helices in PDB entry 1J1W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 30Right-handed alpha
Helix 2
2
A
31 34Right-handed 310
Helix 3
3
A
43 50Right-handed alpha
Helix 4
4
A
52 56Right-handed 310
Helix 5
5
A
57 61Right-handed 310
Helix 6
6
A
64 73Right-handed alpha
Helix 7
7
A
93 103Right-handed alpha
Helix 8
8
A
116 128Right-handed alpha
Helix 9
9
A
134 139Right-handed alpha
Helix 10
10
A
148 158Right-handed alpha
Helix 11
11
A
180 185Right-handed alpha
Helix 12
12
A
228 247Right-handed alpha
Helix 13
13
A
262 282Right-handed alpha
Helix 14
14
A
282 290Right-handed alpha
Helix 15
15
A
292 295Right-handed 310
Helix 16
16
A
296 304Right-handed alpha
Helix 17
17
A
305 307Right-handed 310
Helix 18
18
A
308 326Right-handed alpha
Helix 19
19
A
348 359Right-handed alpha
Helix 20
20
A
382 394Right-handed alpha
Helix 21
21
A
417 424Right-handed 310
Helix 22
22
A
462 481Right-handed alpha
Helix 23
23
A
492 507Right-handed alpha
Helix 24
24
A
520 534Right-handed alpha
Helix 25
25
A
543 560Right-handed alpha
Helix 26
26
A
586 594Right-handed alpha
Helix 27
27
A
603 621Right-handed alpha
Helix 28
28
A
623 643Right-handed alpha
Helix 29
29
A
656 672Right-handed alpha
Helix 30
30
A
677 683Right-handed alpha
Helix 31
31
A
684 692Right-handed alpha
Helix 32
32
A
694 704Right-handed alpha
Helix 33
33
A
719 728Right-handed alpha
Helix 34
34
A
730 736Right-handed alpha
Helix 35
35
B
13 30Right-handed alpha
Helix 36
36
B
31 34Right-handed 310
Helix 37
37
B
43 50Right-handed alpha
Helix 38
38
B
52 56Right-handed 310
Helix 39
39
B
57 61Right-handed 310
Helix 40
40
B
64 73Right-handed alpha
Helix 41
41
B
93 103Right-handed alpha
Helix 42
42
B
116 128Right-handed alpha
Helix 43
43
B
134 139Right-handed alpha
Helix 44
44
B
148 158Right-handed alpha
Helix 45
45
B
180 185Right-handed alpha
Helix 46
46
B
228 247Right-handed alpha
Helix 47
47
B
261 282Right-handed alpha
Helix 48
48
B
282 290Right-handed alpha
Helix 49
49
B
292 295Right-handed 310
Helix 50
50
B
296 304Right-handed alpha
Helix 51
51
B
305 307Right-handed 310
Helix 52
52
B
308 326Right-handed alpha
Helix 53
53
B
348 359Right-handed alpha
Helix 54
54
B
382 394Right-handed alpha
Helix 55
55
B
417 424Right-handed 310
Helix 56
56
B
462 481Right-handed alpha
Helix 57
57
B
492 507Right-handed alpha
Helix 58
58
B
520 534Right-handed alpha
Helix 59
59
B
543 560Right-handed alpha
Helix 60
60
B
586 594Right-handed alpha
Helix 61
61
B
603 621Right-handed alpha
Helix 62
62
B
623 643Right-handed alpha
Helix 63
63
B
656 672Right-handed alpha
Helix 64
64
B
677 683Right-handed alpha
Helix 65
65
B
684 692Right-handed alpha
Helix 66
66
B
694 704Right-handed alpha
Helix 67
67
B
719 728Right-handed alpha
Helix 68
68
B
730 736Right-handed alpha
Helix 69
69
C
13 30Right-handed alpha
Helix 70
70
C
31 34Right-handed 310
Helix 71
71
C
43 50Right-handed alpha
Helix 72
72
C
52 56Right-handed 310
Helix 73
73
C
57 61Right-handed 310
Helix 74
74
C
64 73Right-handed alpha
Helix 75
75
C
93 103Right-handed alpha
Helix 76
76
C
116 128Right-handed alpha
Helix 77
77
C
134 139Right-handed alpha
Helix 78
78
C
148 158Right-handed alpha
Helix 79
79
C
180 185Right-handed alpha
Helix 80
80
C
228 247Right-handed alpha
Helix 81
81
C
262 282Right-handed alpha
Helix 82
82
C
282 290Right-handed alpha
Helix 83
83
C
292 295Right-handed 310
Helix 84
84
C
296 304Right-handed alpha
Helix 85
85
C
305 307Right-handed 310
Helix 86
86
C
308 326Right-handed alpha
Helix 87
87
C
348 359Right-handed alpha
Helix 88
88
C
382 394Right-handed alpha
Helix 89
89
C
417 424Right-handed 310
Helix 90
90
C
462 481Right-handed alpha
Helix 91
91
C
492 507Right-handed alpha
Helix 92
92
C
520 534Right-handed alpha
Helix 93
93
C
543 560Right-handed alpha
Helix 94
94
C
586 594Right-handed alpha
Helix 95
95
C
603 621Right-handed alpha
Helix 96
96
C
623 643Right-handed alpha
Helix 97
97
C
656 672Right-handed alpha
Helix 98
98
C
677 683Right-handed alpha
Helix 99
99
C
684 692Right-handed alpha
Helix 100
100
C
694 704Right-handed alpha
Helix 101
101
C
719 728Right-handed alpha
Helix 102
102
C
730 736Right-handed alpha
Helix 103
103
D
13 30Right-handed alpha
Helix 104
104
D
31 34Right-handed 310
Helix 105
105
D
43 50Right-handed alpha
Helix 106
106
D
52 56Right-handed 310
Helix 107
107
D
57 61Right-handed 310
Helix 108
108
D
64 73Right-handed alpha
Helix 109
109
D
93 103Right-handed alpha
Helix 110
110
D
116 128Right-handed alpha
Helix 111
111
D
134 139Right-handed alpha
Helix 112
112
D
148 158Right-handed alpha
Helix 113
113
D
180 185Right-handed alpha
Helix 114
114
D
228 247Right-handed alpha
Helix 115
115
D
262 282Right-handed alpha
Helix 116
116
D
282 290Right-handed alpha
Helix 117
117
D
292 295Right-handed 310
Helix 118
118
D
296 304Right-handed alpha
Helix 119
119
D
305 307Right-handed 310
Helix 120
120
D
308 326Right-handed alpha
Helix 121
121
D
348 359Right-handed alpha
Helix 122
122
D
382 394Right-handed alpha
Helix 123
123
D
417 424Right-handed 310
Helix 124
124
D
462 481Right-handed alpha
Helix 125
125
D
492 507Right-handed alpha
Helix 126
126
D
520 534Right-handed alpha
Helix 127
127
D
543 560Right-handed alpha
Helix 128
128
D
586 594Right-handed alpha
Helix 129
129
D
603 621Right-handed alpha
Helix 130
130
D
623 643Right-handed alpha
Helix 131
131
D
656 672Right-handed alpha
Helix 132
132
D
677 683Right-handed alpha
Helix 133
133
D
684 692Right-handed alpha
Helix 134
134
D
694 704Right-handed alpha
Helix 135
135
D
719 728Right-handed alpha
Helix 136
136
D
730 736Right-handed alpha
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There are 22 sheets in PDB entry 1J1W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 41first strand
Strand 2
A
5 10parallel
Strand 3
A
80 82parallel
Strand 4
A
576 579parallel
Strand 5
A
566 570anti-parallel
Strand 6
A
144 146anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 252first strand
Strand 2
A
370 376parallel
Strand 3
A
172 174parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 252first strand
Strand 2
A
370 376parallel
Strand 3
A
362 364anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
221 227anti-parallel
Strand 3
A
455 461anti-parallel
Strand 4
A
426 428anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 216first strand
Strand 2
A
194 202anti-parallel
Strand 3
A
433 438anti-parallel
Strand 4
A
444 450anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
539 542parallel
Strand 3
A
484 487parallel
Strand 4
A
516 519parallel
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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
5 10parallel
Strand 3
B
80 82parallel
Strand 4
B
576 579parallel
Strand 5
B
566 570anti-parallel
Strand 6
B
143 146anti-parallel
Strand 7
B
409 411anti-parallel
Strand 8
B
539 542parallel
Strand 9
B
484 487parallel
Strand 10
B
516 519parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 252first strand
Strand 2
B
370 376parallel
Strand 3
B
172 174parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 252first strand
Strand 2
B
370 376parallel
Strand 3
B
362 364anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 189first strand
Strand 2
B
221 227anti-parallel
Strand 3
B
455 461anti-parallel
Strand 4
B
426 428anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 216first strand
Strand 2
B
194 202anti-parallel
Strand 3
B
433 438anti-parallel
Strand 4
B
444 450anti-parallel
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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 41first strand
Strand 2
C
5 10parallel
Strand 3
C
80 82parallel
Strand 4
C
576 579parallel
Strand 5
C
566 570anti-parallel
Strand 6
C
143 146anti-parallel
Strand 7
C
409 411anti-parallel
Strand 8
C
539 542parallel
Strand 9
C
484 487parallel
Strand 10
C
516 519parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
249 252first strand
Strand 2
C
370 376parallel
Strand 3
C
172 174parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
249 252first strand
Strand 2
C
370 376parallel
Strand 3
C
362 364anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 189first strand
Strand 2
C
221 227anti-parallel
Strand 3
C
455 461anti-parallel
Strand 4
C
426 428anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 216first strand
Strand 2
C
194 202anti-parallel
Strand 3
C
433 438anti-parallel
Strand 4
C
444 450anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 41first strand
Strand 2
D
5 10parallel
Strand 3
D
80 82parallel
Strand 4
D
576 579parallel
Strand 5
D
566 570anti-parallel
Strand 6
D
144 146anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
249 252first strand
Strand 2
D
370 376parallel
Strand 3
D
172 174parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
249 252first strand
Strand 2
D
370 376parallel
Strand 3
D
362 364anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 189first strand
Strand 2
D
221 227anti-parallel
Strand 3
D
455 461anti-parallel
Strand 4
D
426 428anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
207 216first strand
Strand 2
D
194 202anti-parallel
Strand 3
D
433 438anti-parallel
Strand 4
D
444 450anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
410 411first strand
Strand 2
D
539 542parallel
Strand 3
D
484 487parallel
Strand 4
D
516 519parallel
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