Analysis of interatomic Contacts of Structural Units in PDB entry:
1J2B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J2B entry

There are 4 chains in PDB entry 1J2B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 901 A 977
D
 G 901 A 977
A
 MET 7GLU 582
B
 MET 7GLU 582
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 1J2B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 45Right-handed 310
Helix 2
2
A
48 56Right-handed alpha
Helix 3
3
A
64 70Right-handed alpha
Helix 4
4
A
70 81Right-handed alpha
Helix 5
5
A
97 104Right-handed alpha
Helix 6
6
A
110 121Right-handed alpha
Helix 7
7
A
138 156Right-handed alpha
Helix 8
8
A
173 187Right-handed alpha
Helix 9
9
A
197 203Right-handed alpha
Helix 10
10
A
205 220Right-handed alpha
Helix 11
11
A
233 242Right-handed alpha
Helix 12
12
A
251 259Right-handed alpha
Helix 13
13
A
281 286Right-handed alpha
Helix 14
14
A
288 295Right-handed alpha
Helix 15
15
A
296 326Right-handed alpha
Helix 16
16
A
327 336Right-handed alpha
Helix 17
17
A
339 350Right-handed alpha
Helix 18
18
A
352 360Right-handed alpha
Helix 19
19
A
373 377Right-handed 310
Helix 20
20
A
378 396Right-handed alpha
Helix 21
21
A
435 448Right-handed alpha
Helix 22
22
A
451 457Right-handed 310
Helix 23
23
A
493 503Right-handed alpha
Helix 24
24
A
516 523Right-handed alpha
Helix 25
25
A
562 567Right-handed alpha
Helix 26
26
B
41 45Right-handed 310
Helix 27
27
B
48 56Right-handed alpha
Helix 28
28
B
63 70Right-handed alpha
Helix 29
29
B
70 81Right-handed alpha
Helix 30
30
B
82 86Right-handed 310
Helix 31
31
B
97 104Right-handed alpha
Helix 32
32
B
110 121Right-handed alpha
Helix 33
33
B
139 156Right-handed alpha
Helix 34
34
B
173 187Right-handed alpha
Helix 35
35
B
197 203Right-handed alpha
Helix 36
36
B
205 220Right-handed alpha
Helix 37
37
B
233 242Right-handed alpha
Helix 38
38
B
251 259Right-handed alpha
Helix 39
39
B
281 286Right-handed alpha
Helix 40
40
B
288 295Right-handed alpha
Helix 41
41
B
296 326Right-handed alpha
Helix 42
42
B
327 336Right-handed alpha
Helix 43
43
B
339 350Right-handed alpha
Helix 44
44
B
352 360Right-handed alpha
Helix 45
45
B
373 377Right-handed 310
Helix 46
46
B
378 396Right-handed alpha
Helix 47
47
B
410 412Right-handed 310
Helix 48
48
B
435 448Right-handed alpha
Helix 49
49
B
451 457Right-handed 310
Helix 50
50
B
493 503Right-handed alpha
Helix 51
51
B
516 523Right-handed alpha
Helix 52
52
B
562 567Right-handed alpha
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There are 16 sheets in PDB entry 1J2B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 16first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
29 33anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 95first strand
Strand 2
A
59 63parallel
Strand 3
A
35 40parallel
Strand 4
A
247 250parallel
Strand 5
A
226 229parallel
Strand 6
A
192 194parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
164 165parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
267 270anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
420 421parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 401first strand
Strand 2
A
405 408anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 463first strand
Strand 2
A
469 474anti-parallel
Strand 3
A
477 482anti-parallel
Strand 4
A
489 491anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 527first strand
Strand 2
A
573 580anti-parallel
Strand 3
A
553 559anti-parallel
Strand 4
A
543 548anti-parallel
Strand 5
A
509 512parallel
Strand 6
A
531 534anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 16first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
29 33anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 94first strand
Strand 2
B
59 62parallel
Strand 3
B
35 40parallel
Strand 4
B
247 250parallel
Strand 5
B
226 229parallel
Strand 6
B
192 194parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
164 165parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 264first strand
Strand 2
B
267 270anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
420 421parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 401first strand
Strand 2
B
405 408anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
460 463first strand
Strand 2
B
469 474anti-parallel
Strand 3
B
477 482anti-parallel
Strand 4
B
489 491anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
526 527first strand
Strand 2
B
573 580anti-parallel
Strand 3
B
553 559anti-parallel
Strand 4
B
543 548anti-parallel
Strand 5
B
509 512parallel
Strand 6
B
531 534anti-parallel
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