Analysis of interatomic Contacts of Structural Units in PDB entry:
1J2G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J2G entry

There are 4 chains in PDB entry 1J2G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7ASP 312
B
 ARG 7ASP 312
C
 ARG 7ASP 312
D
 ARG 7ASP 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 1J2G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 64Right-handed alpha
Helix 2
2
A
72 87Right-handed alpha
Helix 3
3
A
91 107Right-handed alpha
Helix 4
4
A
215 221Right-handed 310
Helix 5
5
A
223 227Right-handed 310
Helix 6
6
A
229 244Right-handed alpha
Helix 7
7
A
248 264Right-handed alpha
Helix 8
8
B
55 57Right-handed 310
Helix 9
9
B
58 64Right-handed alpha
Helix 10
10
B
66 70Right-handed 310
Helix 11
11
B
72 87Right-handed alpha
Helix 12
12
B
91 107Right-handed alpha
Helix 13
13
B
215 220Right-handed 310
Helix 14
14
B
223 227Right-handed 310
Helix 15
15
B
229 244Right-handed alpha
Helix 16
16
B
248 264Right-handed alpha
Helix 17
17
C
55 57Right-handed 310
Helix 18
18
C
58 64Right-handed alpha
Helix 19
19
C
72 87Right-handed alpha
Helix 20
20
C
91 107Right-handed alpha
Helix 21
21
C
215 221Right-handed 310
Helix 22
22
C
223 227Right-handed 310
Helix 23
23
C
229 244Right-handed alpha
Helix 24
24
C
248 264Right-handed alpha
Helix 25
25
D
58 64Right-handed alpha
Helix 26
26
D
72 87Right-handed alpha
Helix 27
27
D
91 107Right-handed alpha
Helix 28
28
D
215 220Right-handed 310
Helix 29
29
D
229 244Right-handed alpha
Helix 30
30
D
248 264Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1J2G. Click on sheet of interest to get list of strands forming it: A, B,

There are 31 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 129first strand
Strand 2
C
132 142anti-parallel
Strand 3
B
162 178anti-parallel
Strand 4
B
147 156anti-parallel
Strand 5
B
112 119anti-parallel
Strand 6
B
44 54anti-parallel
Strand 7
B
9 21anti-parallel
Strand 8
C
293 295anti-parallel
Strand 9
C
280 283anti-parallel
Strand 10
C
293 295anti-parallel
Strand 11
B
9 21anti-parallel
Strand 12
A
301 309anti-parallel
Strand 13
A
267 276anti-parallel
Strand 14
A
203 213anti-parallel
Strand 15
A
162 178anti-parallel
Strand 16
D
132 142anti-parallel
Strand 17
D
122 129anti-parallel
Strand 18
D
132 142anti-parallel
Strand 19
A
162 178anti-parallel
Strand 20
A
147 156anti-parallel
Strand 21
A
112 120anti-parallel
Strand 22
A
44 54anti-parallel
Strand 23
A
9 21anti-parallel
Strand 24
D
293 295anti-parallel
Strand 25
D
280 283anti-parallel
Strand 26
D
293 295anti-parallel
Strand 27
A
9 21anti-parallel
Strand 28
B
301 309anti-parallel
Strand 29
B
267 276anti-parallel
Strand 30
B
204 213anti-parallel
Strand 31
B
162 178anti-parallel
Back to list of sheets
Back to top of page

There are 31 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 129first strand
Strand 2
A
132 142anti-parallel
Strand 3
D
162 178anti-parallel
Strand 4
D
147 156anti-parallel
Strand 5
D
112 119anti-parallel
Strand 6
D
44 54anti-parallel
Strand 7
D
9 21anti-parallel
Strand 8
A
293 295anti-parallel
Strand 9
A
280 283anti-parallel
Strand 10
A
293 295anti-parallel
Strand 11
D
9 21anti-parallel
Strand 12
C
301 309anti-parallel
Strand 13
C
267 276anti-parallel
Strand 14
C
203 213anti-parallel
Strand 15
C
162 178anti-parallel
Strand 16
B
132 142anti-parallel
Strand 17
B
122 129anti-parallel
Strand 18
B
132 142anti-parallel
Strand 19
C
162 178anti-parallel
Strand 20
C
147 156anti-parallel
Strand 21
C
112 119anti-parallel
Strand 22
C
44 54anti-parallel
Strand 23
C
9 21anti-parallel
Strand 24
B
293 295anti-parallel
Strand 25
B
280 283anti-parallel
Strand 26
B
293 295anti-parallel
Strand 27
C
9 21anti-parallel
Strand 28
D
301 309anti-parallel
Strand 29
D
267 276anti-parallel
Strand 30
D
204 213anti-parallel
Strand 31
D
162 178anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il