Analysis of interatomic Contacts of Structural Units in PDB entry:
1J2Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J2Z entry

There is 1 chain in PDB entry 1J2Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2SER 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1J2Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
194 202Right-handed alpha
Helix 2
2
A
203 218Right-handed alpha
Helix 3
3
A
223 235Right-handed alpha
Helix 4
4
A
238 251Right-handed alpha
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There are 3 sheets in PDB entry 1J2Z. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
27 28parallel
Strand 3
A
45 46parallel
Strand 4
A
63 64parallel
Strand 5
A
93 94parallel
Strand 6
A
118 119parallel
Strand 7
A
136 137parallel
Strand 8
A
154 155parallel
Strand 9
A
172 173parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
33 34parallel
Strand 3
A
49 52parallel
Strand 4
A
79 82parallel
Strand 5
A
104 107parallel
Strand 6
A
124 125parallel
Strand 7
A
142 143parallel
Strand 8
A
160 161parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
39 40parallel
Strand 3
A
57 58parallel
Strand 4
A
87 88parallel
Strand 5
A
112 113parallel
Strand 6
A
130 131parallel
Strand 7
A
148 149parallel
Strand 8
A
166 167parallel
Strand 9
A
181 184parallel
Strand 10
A
189 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il