Analysis of interatomic Contacts of Structural Units in PDB entry:
1J32


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J32 entry

There are 2 chains in PDB entry 1J32 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 388
B
 MET 1LEU 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1J32. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 9Right-handed alpha
Helix 2
2
A
18 27Right-handed alpha
Helix 3
3
A
45 58Right-handed alpha
Helix 4
4
A
69 85Right-handed alpha
Helix 5
5
A
89 91Right-handed 310
Helix 6
6
A
97 111Right-handed alpha
Helix 7
7
A
125 134Right-handed alpha
Helix 8
8
A
144 148Right-handed 310
Helix 9
9
A
152 160Right-handed alpha
Helix 10
10
A
181 196Right-handed alpha
Helix 11
11
A
217 221Right-handed 310
Helix 12
12
A
222 228Right-handed alpha
Helix 13
13
A
252 265Right-handed alpha
Helix 14
14
A
271 284Right-handed alpha
Helix 15
15
A
286 309Right-handed alpha
Helix 16
16
A
328 332Right-handed 310
Helix 17
17
A
334 347Right-handed alpha
Helix 18
18
A
354 357Right-handed 310
Helix 19
19
A
369 388Right-handed alpha
Helix 20
20
B
4 9Right-handed alpha
Helix 21
21
B
15 28Right-handed alpha
Helix 22
22
B
45 58Right-handed alpha
Helix 23
23
B
69 85Right-handed alpha
Helix 24
24
B
89 91Right-handed 310
Helix 25
25
B
97 111Right-handed alpha
Helix 26
26
B
125 134Right-handed alpha
Helix 27
27
B
144 148Right-handed 310
Helix 28
28
B
152 160Right-handed alpha
Helix 29
29
B
181 195Right-handed alpha
Helix 30
30
B
217 221Right-handed 310
Helix 31
31
B
222 228Right-handed alpha
Helix 32
32
B
241 245Right-handed 310
Helix 33
33
B
252 265Right-handed alpha
Helix 34
34
B
271 284Right-handed alpha
Helix 35
35
B
286 309Right-handed alpha
Helix 36
36
B
328 332Right-handed 310
Helix 37
37
B
334 347Right-handed alpha
Helix 38
38
B
354 357Right-handed 310
Helix 39
39
B
369 388Right-handed alpha
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There are 6 sheets in PDB entry 1J32. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
348 349parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
247 250anti-parallel
Strand 3
A
229 234anti-parallel
Strand 4
A
198 202parallel
Strand 5
A
164 170parallel
Strand 6
A
116 120parallel
Strand 7
A
137 141parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
362 365anti-parallel
Strand 3
A
351 352anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
348 349parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
247 250anti-parallel
Strand 3
B
229 234anti-parallel
Strand 4
B
198 202parallel
Strand 5
B
164 170parallel
Strand 6
B
116 120parallel
Strand 7
B
137 141parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 324first strand
Strand 2
B
362 365anti-parallel
Strand 3
B
351 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il