Analysis of interatomic Contacts of Structural Units in PDB entry:
1J38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J38 entry

There are 2 chains in PDB entry 1J38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 23HIS 620
B
 ILE 23HIS 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 1J38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 53Right-handed alpha
Helix 2
2
A
55 78Right-handed alpha
Helix 3
3
A
79 82Right-handed 310
Helix 4
4
A
90 102Right-handed alpha
Helix 5
5
A
104 108Right-handed 310
Helix 6
6
A
109 129Right-handed alpha
Helix 7
7
A
147 156Right-handed alpha
Helix 8
8
A
158 174Right-handed alpha
Helix 9
9
A
177 194Right-handed alpha
Helix 10
10
A
199 206Right-handed alpha
Helix 11
11
A
207 209Right-handed 310
Helix 12
12
A
212 243Right-handed alpha
Helix 13
13
A
267 271Right-handed 310
Helix 14
14
A
285 292Right-handed alpha
Helix 15
15
A
295 310Right-handed alpha
Helix 16
16
A
316 323Right-handed alpha
Helix 17
17
A
358 378Right-handed alpha
Helix 18
18
A
382 386Right-handed 310
Helix 19
19
A
389 405Right-handed alpha
Helix 20
20
A
407 414Right-handed alpha
Helix 21
21
A
427 436Right-handed alpha
Helix 22
22
A
437 457Right-handed alpha
Helix 23
23
A
461 463Right-handed 310
Helix 24
24
A
464 478Right-handed alpha
Helix 25
25
A
491 494Right-handed 310
Helix 26
26
A
495 500Right-handed alpha
Helix 27
27
A
504 524Right-handed alpha
Helix 28
28
A
545 557Right-handed alpha
Helix 29
29
A
563 573Right-handed alpha
Helix 30
30
A
579 600Right-handed alpha
Helix 31
31
B
25 53Right-handed alpha
Helix 32
32
B
55 78Right-handed alpha
Helix 33
33
B
79 82Right-handed 310
Helix 34
34
B
90 102Right-handed alpha
Helix 35
35
B
104 108Right-handed 310
Helix 36
36
B
109 129Right-handed alpha
Helix 37
37
B
147 156Right-handed alpha
Helix 38
38
B
158 174Right-handed alpha
Helix 39
39
B
177 194Right-handed alpha
Helix 40
40
B
199 206Right-handed alpha
Helix 41
41
B
207 209Right-handed 310
Helix 42
42
B
212 243Right-handed alpha
Helix 43
43
B
267 271Right-handed 310
Helix 44
44
B
285 292Right-handed alpha
Helix 45
45
B
295 310Right-handed alpha
Helix 46
46
B
316 323Right-handed alpha
Helix 47
47
B
358 378Right-handed alpha
Helix 48
48
B
382 386Right-handed 310
Helix 49
49
B
389 405Right-handed alpha
Helix 50
50
B
407 414Right-handed alpha
Helix 51
51
B
427 436Right-handed alpha
Helix 52
52
B
437 457Right-handed alpha
Helix 53
53
B
461 463Right-handed 310
Helix 54
54
B
464 478Right-handed alpha
Helix 55
55
B
491 494Right-handed 310
Helix 56
56
B
495 500Right-handed alpha
Helix 57
57
B
504 524Right-handed alpha
Helix 58
58
B
545 557Right-handed alpha
Helix 59
59
B
563 573Right-handed alpha
Helix 60
60
B
579 600Right-handed alpha
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There are 6 sheets in PDB entry 1J38. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
479 480parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 342first strand
Strand 2
A
349 352anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 486first strand
Strand 2
A
612 613parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 255first strand
Strand 2
B
479 480parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 342first strand
Strand 2
B
349 352anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
485 486first strand
Strand 2
B
612 613parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il