Analysis of interatomic Contacts of Structural Units in PDB entry:
1J3B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J3B entry

There are 2 chains in PDB entry 1J3B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2GLU 529
B
 GLN 2THR 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1J3B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
20 31Right-handed alpha
Helix 3
3
A
53 55Right-handed 310
Helix 4
4
A
79 96Right-handed alpha
Helix 5
5
A
122 133Right-handed alpha
Helix 6
6
A
135 140Right-handed 310
Helix 7
7
A
163 168Right-handed alpha
Helix 8
8
A
192 207Right-handed alpha
Helix 9
9
A
208 211Right-handed 310
Helix 10
10
A
237 242Right-handed alpha
Helix 11
11
A
281 289Right-handed alpha
Helix 12
12
A
325 327Right-handed 310
Helix 13
13
A
360 371Right-handed alpha
Helix 14
14
A
392 399Right-handed 310
Helix 15
15
A
402 418Right-handed alpha
Helix 16
16
A
440 453Right-handed alpha
Helix 17
17
A
454 459Right-handed 310
Helix 18
18
A
479 489Right-handed 310
Helix 19
19
A
491 515Right-handed alpha
Helix 20
20
A
518 524Right-handed alpha
Helix 21
21
B
4 8Right-handed 310
Helix 22
22
B
20 31Right-handed alpha
Helix 23
23
B
53 55Right-handed 310
Helix 24
24
B
79 96Right-handed alpha
Helix 25
25
B
122 133Right-handed alpha
Helix 26
26
B
135 140Right-handed 310
Helix 27
27
B
163 168Right-handed alpha
Helix 28
28
B
192 210Right-handed alpha
Helix 29
29
B
237 243Right-handed alpha
Helix 30
30
B
281 289Right-handed alpha
Helix 31
31
B
325 327Right-handed 310
Helix 32
32
B
360 371Right-handed alpha
Helix 33
33
B
392 399Right-handed 310
Helix 34
34
B
402 418Right-handed alpha
Helix 35
35
B
440 453Right-handed alpha
Helix 36
36
B
454 459Right-handed 310
Helix 37
37
B
479 483Right-handed 310
Helix 38
38
B
484 489Right-handed 310
Helix 39
39
B
491 515Right-handed alpha
Helix 40
40
B
518 523Right-handed alpha
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There are 16 sheets in PDB entry 1J3B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
99 106parallel
Strand 3
A
114 120anti-parallel
Strand 4
A
152 157parallel
Strand 5
A
183 187parallel
Strand 6
A
174 178anti-parallel
Strand 7
A
57 60parallel
Strand 8
A
76 78parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
294 296parallel
Strand 4
A
319 323anti-parallel
Strand 5
A
268 272anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
254 257anti-parallel
Strand 3
A
262 264anti-parallel
Strand 4
A
335 336anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
218 221anti-parallel
Strand 3
A
227 232anti-parallel
Strand 4
A
339 346parallel
Strand 5
A
420 425parallel
Strand 6
A
356 359anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
307 308anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 375first strand
Strand 2
A
387 390anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
437 438anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 463first strand
Strand 2
A
470 472anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
99 106parallel
Strand 3
B
114 120anti-parallel
Strand 4
B
152 157parallel
Strand 5
B
183 187parallel
Strand 6
B
174 178anti-parallel
Strand 7
B
57 60parallel
Strand 8
B
76 78parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
42 44anti-parallel
Strand 3
B
294 296parallel
Strand 4
B
319 323anti-parallel
Strand 5
B
268 272anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 216first strand
Strand 2
B
254 257anti-parallel
Strand 3
B
262 264anti-parallel
Strand 4
B
335 336anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 251first strand
Strand 2
B
218 221anti-parallel
Strand 3
B
227 232anti-parallel
Strand 4
B
339 346parallel
Strand 5
B
420 425parallel
Strand 6
B
356 358anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
307 308anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 375first strand
Strand 2
B
387 390anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 429first strand
Strand 2
B
437 438anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 463first strand
Strand 2
B
470 472anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il