Analysis of interatomic Contacts of Structural Units in PDB entry:
1J3I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J3I entry

There are 4 chains in PDB entry 1J3I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 233
B
 MET 2ASN 231
C
 ASP 282ALA 608
D
 ASP 281ALA 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 1J3I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 9Right-handed alpha
Helix 2
2
A
33 35Right-handed 310
Helix 3
3
A
51 64Right-handed alpha
Helix 4
4
A
66 68Right-handed 310
Helix 5
5
A
69 81Right-handed alpha
Helix 6
6
A
106 112Right-handed alpha
Helix 7
7
A
113 117Right-handed 310
Helix 8
8
A
132 136Right-handed 310
Helix 9
9
A
145 156Right-handed alpha
Helix 10
10
A
166 176Right-handed alpha
Helix 11
11
B
4 9Right-handed alpha
Helix 12
12
B
33 35Right-handed 310
Helix 13
13
B
51 64Right-handed alpha
Helix 14
14
B
66 68Right-handed 310
Helix 15
15
B
69 82Right-handed alpha
Helix 16
16
B
106 112Right-handed alpha
Helix 17
17
B
113 117Right-handed 310
Helix 18
18
B
132 136Right-handed 310
Helix 19
19
B
145 155Right-handed alpha
Helix 20
20
B
166 176Right-handed alpha
Helix 21
21
C
284 294Right-handed alpha
Helix 22
22
C
295 297Right-handed 310
Helix 23
23
C
308 311Right-handed 310
Helix 24
24
C
312 318Right-handed alpha
Helix 25
25
C
325 339Right-handed alpha
Helix 26
26
C
376 388Right-handed alpha
Helix 27
27
C
392 398Right-handed alpha
Helix 28
28
C
405 408Right-handed 310
Helix 29
29
C
409 416Right-handed alpha
Helix 30
30
C
429 437Right-handed alpha
Helix 31
31
C
454 466Right-handed alpha
Helix 32
32
C
478 485Right-handed 310
Helix 33
33
C
516 536Right-handed alpha
Helix 34
34
C
556 564Right-handed alpha
Helix 35
35
C
582 586Right-handed 310
Helix 36
36
C
587 589Right-handed 310
Helix 37
37
D
285 294Right-handed alpha
Helix 38
38
D
312 318Right-handed alpha
Helix 39
39
D
325 339Right-handed alpha
Helix 40
40
D
376 388Right-handed alpha
Helix 41
41
D
392 398Right-handed alpha
Helix 42
42
D
405 408Right-handed 310
Helix 43
43
D
409 416Right-handed alpha
Helix 44
44
D
429 437Right-handed alpha
Helix 45
45
D
454 466Right-handed alpha
Helix 46
46
D
478 485Right-handed 310
Helix 47
47
D
516 536Right-handed alpha
Helix 48
48
D
556 565Right-handed alpha
Helix 49
49
D
582 586Right-handed 310
Helix 50
50
D
587 589Right-handed 310
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There are 6 sheets in PDB entry 1J3I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 15 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
122 127parallel
Strand 3
A
100 105parallel
Strand 4
A
161 163parallel
Strand 5
A
11 20parallel
Strand 6
A
37 41anti-parallel
Strand 7
A
195 196anti-parallel
Strand 8
A
37 41anti-parallel
Strand 9
A
11 20anti-parallel
Strand 10
A
181 191parallel
Strand 11
A
220 228anti-parallel
Strand 12
A
214 215anti-parallel
Strand 13
A
220 228anti-parallel
Strand 14
A
205 210anti-parallel
Strand 15
C
320 321parallel
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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
122 127parallel
Strand 3
B
100 105parallel
Strand 4
B
161 163parallel
Strand 5
B
11 20parallel
Strand 6
B
37 41anti-parallel
Strand 7
B
195 196anti-parallel
Strand 8
B
37 41anti-parallel
Strand 9
B
11 20anti-parallel
Strand 10
B
181 191parallel
Strand 11
B
219 228anti-parallel
Strand 12
B
205 216anti-parallel
Strand 13
D
320 321parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
340 342first strand
Strand 2
C
350 361anti-parallel
Strand 3
C
539 553anti-parallel
Strand 4
C
502 513parallel
Strand 5
C
491 499anti-parallel
Strand 6
C
473 475anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
573 576first strand
Strand 2
C
591 594anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
340 342first strand
Strand 2
D
350 361anti-parallel
Strand 3
D
539 553anti-parallel
Strand 4
D
502 513parallel
Strand 5
D
491 499anti-parallel
Strand 6
D
473 475anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
573 576first strand
Strand 2
D
591 594anti-parallel
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