Analysis of interatomic Contacts of Structural Units in PDB entry:
1J3L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J3L entry

There are 6 chains in PDB entry 1J3L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 164
B
 MET 1GLY 164
C
 MET 1ARG 161
D
 MET 1GLY 164
E
 MET 1GLY 164
F
 MET 1PRO 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1J3L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 12Right-handed alpha
Helix 2
2
A
44 52Right-handed alpha
Helix 3
3
A
74 84Right-handed alpha
Helix 4
4
A
97 102Right-handed alpha
Helix 5
5
B
4 12Right-handed alpha
Helix 6
6
B
44 52Right-handed alpha
Helix 7
7
B
74 84Right-handed alpha
Helix 8
8
B
97 102Right-handed alpha
Helix 9
9
C
4 12Right-handed alpha
Helix 10
10
C
44 53Right-handed alpha
Helix 11
11
C
74 84Right-handed alpha
Helix 12
12
C
97 102Right-handed alpha
Helix 13
13
D
6 12Right-handed alpha
Helix 14
14
D
44 53Right-handed alpha
Helix 15
15
D
74 84Right-handed alpha
Helix 16
16
D
97 102Right-handed alpha
Helix 17
17
E
4 12Right-handed alpha
Helix 18
18
E
44 51Right-handed alpha
Helix 19
19
E
74 84Right-handed alpha
Helix 20
20
E
97 102Right-handed alpha
Helix 21
21
F
4 10Right-handed alpha
Helix 22
22
F
44 52Right-handed alpha
Helix 23
23
F
74 84Right-handed alpha
Helix 24
24
F
97 102Right-handed alpha
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There are 18 sheets in PDB entry 1J3L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
107 110anti-parallel
Strand 3
A
88 92parallel
Strand 4
A
58 63parallel
Strand 5
A
31 39parallel
Strand 6
A
125 126anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
107 110anti-parallel
Strand 3
A
88 92parallel
Strand 4
A
58 63parallel
Strand 5
A
31 39parallel
Strand 6
A
142 146anti-parallel
Strand 7
A
149 153anti-parallel
Strand 8
A
16 18anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
112 113parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
135 137anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
107 113anti-parallel
Strand 3
B
88 95parallel
Strand 4
B
58 63parallel
Strand 5
B
31 39parallel
Strand 6
B
125 126anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
107 113anti-parallel
Strand 3
B
88 95parallel
Strand 4
B
58 63parallel
Strand 5
B
31 39parallel
Strand 6
B
142 146anti-parallel
Strand 7
B
149 153anti-parallel
Strand 8
B
16 18anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
135 137anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 18first strand
Strand 2
C
149 153anti-parallel
Strand 3
C
142 146anti-parallel
Strand 4
C
31 39anti-parallel
Strand 5
C
59 63parallel
Strand 6
C
88 95parallel
Strand 7
C
107 113parallel
Strand 8
C
23 24anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 18first strand
Strand 2
C
149 153anti-parallel
Strand 3
C
142 146anti-parallel
Strand 4
C
31 39anti-parallel
Strand 5
C
125 126anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 132first strand
Strand 2
C
135 137anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 24first strand
Strand 2
D
107 113anti-parallel
Strand 3
D
88 95parallel
Strand 4
D
58 63parallel
Strand 5
D
31 39parallel
Strand 6
D
125 126anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 24first strand
Strand 2
D
107 113anti-parallel
Strand 3
D
88 95parallel
Strand 4
D
58 63parallel
Strand 5
D
31 39parallel
Strand 6
D
142 146anti-parallel
Strand 7
D
149 153anti-parallel
Strand 8
D
16 18anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 131first strand
Strand 2
D
136 137anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
23 24first strand
Strand 2
E
107 113anti-parallel
Strand 3
E
88 95parallel
Strand 4
E
58 63parallel
Strand 5
E
31 35parallel
Strand 6
E
142 146anti-parallel
Strand 7
E
149 153anti-parallel
Strand 8
E
16 19anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
23 24first strand
Strand 2
E
107 113anti-parallel
Strand 3
E
88 95parallel
Strand 4
E
58 63parallel
Strand 5
E
38 39parallel
Strand 6
E
125 126anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
16 19first strand
Strand 2
F
149 153anti-parallel
Strand 3
F
141 146anti-parallel
Strand 4
F
31 35anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
23 24first strand
Strand 2
F
108 113anti-parallel
Strand 3
F
89 95parallel
Strand 4
F
60 63parallel
Strand 5
F
37 39parallel
Strand 6
F
125 126anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
130 131first strand
Strand 2
F
136 137anti-parallel
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