Analysis of interatomic Contacts of Structural Units in PDB entry:
1J3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J3M entry

There are 2 chains in PDB entry 1J3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3LEU 129
B
 GLY 203LEU 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1J3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 26Right-handed alpha
Helix 2
2
A
36 45Right-handed alpha
Helix 3
3
A
58 69Right-handed alpha
Helix 4
4
A
70 76Right-handed 310
Helix 5
5
A
95 100Right-handed alpha
Helix 6
6
A
101 103Right-handed 310
Helix 7
7
A
104 129Right-handed alpha
Helix 8
8
B
211 226Right-handed alpha
Helix 9
9
B
236 245Right-handed alpha
Helix 10
10
B
258 269Right-handed alpha
Helix 11
11
B
270 275Right-handed 310
Helix 12
12
B
295 300Right-handed alpha
Helix 13
13
B
301 303Right-handed 310
Helix 14
14
B
304 306Right-handed 310
Helix 15
15
B
307 329Right-handed alpha
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There are 2 sheets in PDB entry 1J3M. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
88 93anti-parallel
Strand 3
A
78 85anti-parallel
Strand 4
A
51 57anti-parallel
Strand 5
A
29 35anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
288 293anti-parallel
Strand 3
B
278 285anti-parallel
Strand 4
B
251 257anti-parallel
Strand 5
B
229 235anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il