Analysis of interatomic Contacts of Structural Units in PDB entry:
1J3U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J3U entry

There are 2 chains in PDB entry 1J3U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLY 466
B
 VAL 5GLY 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1J3U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 34Right-handed alpha
Helix 2
2
A
42 63Right-handed alpha
Helix 3
3
A
67 83Right-handed alpha
Helix 4
4
A
86 90Right-handed 310
Helix 5
5
A
97 99Right-handed 310
Helix 6
6
A
100 119Right-handed alpha
Helix 7
7
A
140 178Right-handed alpha
Helix 8
8
A
197 218Right-handed alpha
Helix 9
9
A
219 222Right-handed 310
Helix 10
10
A
239 255Right-handed alpha
Helix 11
11
A
263 270Right-handed alpha
Helix 12
12
A
271 299Right-handed alpha
Helix 13
13
A
327 353Right-handed alpha
Helix 14
14
A
361 386Right-handed alpha
Helix 15
15
A
387 391Right-handed 310
Helix 16
16
A
394 404Right-handed alpha
Helix 17
17
A
407 415Right-handed 310
Helix 18
18
A
416 427Right-handed alpha
Helix 19
19
A
434 441Right-handed alpha
Helix 20
20
A
446 454Right-handed alpha
Helix 21
21
A
457 461Right-handed 310
Helix 22
22
B
24 34Right-handed alpha
Helix 23
23
B
42 63Right-handed alpha
Helix 24
24
B
69 83Right-handed alpha
Helix 25
25
B
100 119Right-handed alpha
Helix 26
26
B
140 178Right-handed alpha
Helix 27
27
B
197 218Right-handed alpha
Helix 28
28
B
219 222Right-handed 310
Helix 29
29
B
239 255Right-handed alpha
Helix 30
30
B
263 270Right-handed alpha
Helix 31
31
B
271 299Right-handed alpha
Helix 32
32
B
327 353Right-handed alpha
Helix 33
33
B
361 386Right-handed alpha
Helix 34
34
B
394 404Right-handed alpha
Helix 35
35
B
408 413Right-handed alpha
Helix 36
36
B
416 432Right-handed alpha
Helix 37
37
B
434 442Right-handed alpha
Helix 38
38
B
446 452Right-handed alpha
Helix 39
39
B
455 460Right-handed alpha
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There are 8 sheets in PDB entry 1J3U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
13 16anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 187first strand
Strand 2
A
190 196anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
259 260parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
392 393anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
13 15anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 187first strand
Strand 2
B
190 196anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
259 260parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 310first strand
Strand 2
B
392 393anti-parallel
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