Analysis of interatomic Contacts of Structural Units in PDB entry:
1J41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J41 entry

There are 8 chains in PDB entry 1J41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ARG 141
B
 VAL 1HIS 146
C
 VAL 1ARG 141
D
 VAL 1HIS 146
E
 VAL 1ARG 141
F
 VAL 1HIS 146
G
 VAL 1ARG 141
H
 VAL 1HIS 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 1J41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 18Right-handed alpha
Helix 2
2
A
20 36Right-handed alpha
Helix 3
3
A
37 43Right-handed 310
Helix 4
4
A
52 72Right-handed alpha
Helix 5
5
A
75 80Right-handed alpha
Helix 6
6
A
80 90Right-handed alpha
Helix 7
7
A
95 113Right-handed alpha
Helix 8
8
A
118 138Right-handed alpha
Helix 9
9
B
4 16Right-handed alpha
Helix 10
10
B
19 35Right-handed alpha
Helix 11
11
B
36 46Right-handed 310
Helix 12
12
B
50 56Right-handed alpha
Helix 13
13
B
57 75Right-handed alpha
Helix 14
14
B
80 85Right-handed alpha
Helix 15
15
B
85 95Right-handed alpha
Helix 16
16
B
100 119Right-handed alpha
Helix 17
17
B
120 122Right-handed 310
Helix 18
18
B
123 143Right-handed alpha
Helix 19
19
C
3 18Right-handed alpha
Helix 20
20
C
20 36Right-handed alpha
Helix 21
21
C
37 43Right-handed 310
Helix 22
22
C
52 72Right-handed alpha
Helix 23
23
C
75 80Right-handed alpha
Helix 24
24
C
80 90Right-handed alpha
Helix 25
25
C
95 113Right-handed alpha
Helix 26
26
C
118 138Right-handed alpha
Helix 27
27
D
4 16Right-handed alpha
Helix 28
28
D
19 35Right-handed alpha
Helix 29
29
D
36 46Right-handed 310
Helix 30
30
D
50 57Right-handed alpha
Helix 31
31
D
57 76Right-handed alpha
Helix 32
32
D
77 79Right-handed 310
Helix 33
33
D
80 85Right-handed alpha
Helix 34
34
D
85 95Right-handed alpha
Helix 35
35
D
100 119Right-handed alpha
Helix 36
36
D
120 122Right-handed 310
Helix 37
37
D
123 143Right-handed alpha
Helix 38
38
E
3 18Right-handed alpha
Helix 39
39
E
20 36Right-handed alpha
Helix 40
40
E
37 43Right-handed 310
Helix 41
41
E
52 72Right-handed alpha
Helix 42
42
E
75 80Right-handed alpha
Helix 43
43
E
80 90Right-handed alpha
Helix 44
44
E
95 113Right-handed alpha
Helix 45
45
E
118 137Right-handed alpha
Helix 46
46
F
4 16Right-handed alpha
Helix 47
47
F
21 35Right-handed alpha
Helix 48
48
F
36 46Right-handed 310
Helix 49
49
F
50 56Right-handed alpha
Helix 50
50
F
57 77Right-handed alpha
Helix 51
51
F
80 85Right-handed alpha
Helix 52
52
F
85 95Right-handed alpha
Helix 53
53
F
100 119Right-handed alpha
Helix 54
54
F
120 122Right-handed 310
Helix 55
55
F
123 143Right-handed alpha
Helix 56
56
G
3 18Right-handed alpha
Helix 57
57
G
20 36Right-handed alpha
Helix 58
58
G
37 43Right-handed 310
Helix 59
59
G
52 72Right-handed alpha
Helix 60
60
G
75 80Right-handed alpha
Helix 61
61
G
80 90Right-handed alpha
Helix 62
62
G
95 113Right-handed alpha
Helix 63
63
G
118 137Right-handed alpha
Helix 64
64
H
4 16Right-handed alpha
Helix 65
65
H
19 35Right-handed alpha
Helix 66
66
H
36 46Right-handed 310
Helix 67
67
H
50 57Right-handed alpha
Helix 68
68
H
57 76Right-handed alpha
Helix 69
69
H
80 85Right-handed alpha
Helix 70
70
H
85 95Right-handed alpha
Helix 71
71
H
100 119Right-handed alpha
Helix 72
72
H
120 122Right-handed 310
Helix 73
73
H
123 143Right-handed alpha
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There are no sheets in PDB entry 1J41
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