Analysis of interatomic Contacts of Structural Units in PDB entry:
1J49


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J49 entry

There are 2 chains in PDB entry 1J49 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 332
B
 MET 1VAL 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1J49. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
13 23Right-handed alpha
Helix 3
3
A
40 45Right-handed 310
Helix 4
4
A
59 68Right-handed alpha
Helix 5
5
A
85 93Right-handed alpha
Helix 6
6
A
103 120Right-handed alpha
Helix 7
7
A
121 131Right-handed alpha
Helix 8
8
A
143 146Right-handed 310
Helix 9
9
A
155 168Right-handed alpha
Helix 10
10
A
180 187Right-handed alpha
Helix 11
11
A
192 200Right-handed alpha
Helix 12
12
A
218 225Right-handed alpha
Helix 13
13
A
236 240Right-handed 310
Helix 14
14
A
241 251Right-handed alpha
Helix 15
15
A
280 289Right-handed alpha
Helix 16
16
A
302 322Right-handed alpha
Helix 17
17
B
10 12Right-handed 310
Helix 18
18
B
13 22Right-handed alpha
Helix 19
19
B
37 42Right-handed alpha
Helix 20
20
B
43 45Right-handed 310
Helix 21
21
B
59 68Right-handed alpha
Helix 22
22
B
85 92Right-handed alpha
Helix 23
23
B
103 121Right-handed alpha
Helix 24
24
B
121 131Right-handed alpha
Helix 25
25
B
143 146Right-handed 310
Helix 26
26
B
155 168Right-handed alpha
Helix 27
27
B
180 187Right-handed alpha
Helix 28
28
B
192 200Right-handed alpha
Helix 29
29
B
210 214Right-handed 310
Helix 30
30
B
218 224Right-handed alpha
Helix 31
31
B
236 240Right-handed 310
Helix 32
32
B
241 251Right-handed alpha
Helix 33
33
B
280 289Right-handed alpha
Helix 34
34
B
302 322Right-handed alpha
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There are 4 sheets in PDB entry 1J49. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
3 6parallel
Strand 3
A
49 52parallel
Strand 4
A
73 76parallel
Strand 5
A
95 97parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
148 152parallel
Strand 3
A
202 205parallel
Strand 4
A
229 233parallel
Strand 5
A
254 259parallel
Strand 6
A
292 294parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
3 6parallel
Strand 3
B
49 52parallel
Strand 4
B
73 76parallel
Strand 5
B
95 97parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
148 152parallel
Strand 3
B
202 205parallel
Strand 4
B
229 233parallel
Strand 5
B
254 259parallel
Strand 6
B
292 294parallel
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