Analysis of interatomic Contacts of Structural Units in PDB entry:
1J4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J4F entry

There is 1 chain in PDB entry 1J4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 228LYS 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1J4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
233 242Right-handed alpha
Helix 2
2
A
258 268Right-handed alpha
Helix 3
3
A
279 293Right-handed alpha
Helix 4
4
A
304 311Right-handed alpha
Helix 5
5
A
347 363Right-handed alpha
Helix 6
6
A
379 394Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1J4F.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 301first strand
Strand 2
A
272 277parallel
Strand 3
A
249 253parallel
Strand 4
A
316 321parallel
Strand 5
A
364 374parallel
Strand 6
A
419 425anti-parallel
Strand 7
A
398 403anti-parallel
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