Analysis of interatomic Contacts of Structural Units in PDB entry:
1J4G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J4G entry

There are 4 chains in PDB entry 1J4G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LEU 240
B
 MET 0LEU 240
C
 MET 0LEU 240
D
 MET 0LEU 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 1J4G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
42 46Right-handed alpha
Helix 3
3
A
85 95Right-handed alpha
Helix 4
4
A
110 119Right-handed alpha
Helix 5
5
A
121 125Right-handed 310
Helix 6
6
A
128 141Right-handed alpha
Helix 7
7
A
146 158Right-handed alpha
Helix 8
8
A
158 164Right-handed alpha
Helix 9
9
A
164 173Right-handed alpha
Helix 10
10
A
182 204Right-handed alpha
Helix 11
11
A
230 235Right-handed alpha
Helix 12
12
B
10 25Right-handed alpha
Helix 13
13
B
42 46Right-handed alpha
Helix 14
14
B
85 92Right-handed alpha
Helix 15
15
B
110 119Right-handed alpha
Helix 16
16
B
121 125Right-handed 310
Helix 17
17
B
128 141Right-handed alpha
Helix 18
18
B
146 158Right-handed alpha
Helix 19
19
B
158 164Right-handed alpha
Helix 20
20
B
164 174Right-handed alpha
Helix 21
21
B
182 203Right-handed alpha
Helix 22
22
B
230 236Right-handed alpha
Helix 23
23
C
10 24Right-handed alpha
Helix 24
24
C
42 46Right-handed alpha
Helix 25
25
C
85 95Right-handed alpha
Helix 26
26
C
110 119Right-handed alpha
Helix 27
27
C
121 125Right-handed 310
Helix 28
28
C
128 141Right-handed alpha
Helix 29
29
C
146 158Right-handed alpha
Helix 30
30
C
158 164Right-handed alpha
Helix 31
31
C
164 174Right-handed alpha
Helix 32
32
C
182 204Right-handed alpha
Helix 33
33
C
230 235Right-handed alpha
Helix 34
34
D
10 25Right-handed alpha
Helix 35
35
D
42 46Right-handed alpha
Helix 36
36
D
85 92Right-handed alpha
Helix 37
37
D
110 119Right-handed alpha
Helix 38
38
D
121 125Right-handed 310
Helix 39
39
D
128 141Right-handed alpha
Helix 40
40
D
146 158Right-handed alpha
Helix 41
41
D
158 164Right-handed alpha
Helix 42
42
D
164 173Right-handed alpha
Helix 43
43
D
182 203Right-handed alpha
Helix 44
44
D
230 235Right-handed alpha
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There are 12 sheets in PDB entry 1J4G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
47 53parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
71 76anti-parallel
Strand 5
A
79 82anti-parallel
Strand 6
A
101 104parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
34 37anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 216first strand
Strand 2
A
222 227anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
47 53parallel
Strand 3
B
59 65anti-parallel
Strand 4
B
71 76anti-parallel
Strand 5
B
79 82anti-parallel
Strand 6
B
101 104parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
34 37anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 216first strand
Strand 2
B
222 227anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
47 53parallel
Strand 3
C
59 65anti-parallel
Strand 4
C
71 76anti-parallel
Strand 5
C
79 83anti-parallel
Strand 6
C
101 105parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 31first strand
Strand 2
C
34 37anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 216first strand
Strand 2
C
222 227anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
47 53parallel
Strand 3
D
59 65anti-parallel
Strand 4
D
71 76anti-parallel
Strand 5
D
79 82anti-parallel
Strand 6
D
101 104parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 31first strand
Strand 2
D
34 37anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
208 216first strand
Strand 2
D
222 227anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il