Analysis of interatomic Contacts of Structural Units in PDB entry:
1J51

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1J51 entry

There are 4 chains in PDB entry 1J51 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	VAL 414
B	ASN 10	VAL 414
C	ASN 10	VAL 414
D	ASN 10	VAL 414

There are 88 helices in PDB entry 1J51. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	19	23	Right-handed 310
Helix 2	2	A	33	36	Right-handed 310
Helix 3	3	A	37	43	Right-handed alpha
Helix 4	4	A	44	47	Right-handed 310
Helix 5	5	A	57	61	Right-handed 310
Helix 6	6	A	67	77	Right-handed alpha
Helix 7	7	A	89	96	Right-handed alpha
Helix 8	8	A	107	120	Right-handed alpha
Helix 9	9	A	120	143	Right-handed alpha
Helix 10	10	A	150	154	Right-handed alpha
Helix 11	11	A	156	167	Right-handed alpha
Helix 12	12	A	170	172	Right-handed 310
Helix 13	13	A	173	186	Right-handed alpha
Helix 14	14	A	192	212	Right-handed alpha
Helix 15	15	A	218	225	Right-handed alpha
Helix 16	16	A	234	251	Right-handed alpha
Helix 17	17	A	252	266	Right-handed alpha
Helix 18	18	A	267	277	Right-handed alpha
Helix 19	19	A	280	292	Right-handed alpha
Helix 20	20	A	321	328	Right-handed 310
Helix 21	21	A	359	378	Right-handed alpha
Helix 22	22	A	407	411	Right-handed 310
Helix 23	23	B	19	23	Right-handed 310
Helix 24	24	B	33	36	Right-handed 310
Helix 25	25	B	37	43	Right-handed alpha
Helix 26	26	B	44	47	Right-handed 310
Helix 27	27	B	67	77	Right-handed alpha
Helix 28	28	B	89	96	Right-handed alpha
Helix 29	29	B	106	120	Right-handed alpha
Helix 30	30	B	120	143	Right-handed alpha
Helix 31	31	B	150	154	Right-handed alpha
Helix 32	32	B	156	167	Right-handed alpha
Helix 33	33	B	170	172	Right-handed 310
Helix 34	34	B	173	186	Right-handed alpha
Helix 35	35	B	192	214	Right-handed alpha
Helix 36	36	B	218	225	Right-handed alpha
Helix 37	37	B	234	250	Right-handed alpha
Helix 38	38	B	252	266	Right-handed alpha
Helix 39	39	B	267	277	Right-handed alpha
Helix 40	40	B	280	292	Right-handed alpha
Helix 41	41	B	321	325	Right-handed 310
Helix 42	42	B	352	356	Right-handed 310
Helix 43	43	B	359	378	Right-handed alpha
Helix 44	44	B	407	411	Right-handed 310
Helix 45	45	C	19	23	Right-handed 310
Helix 46	46	C	33	36	Right-handed 310
Helix 47	47	C	37	44	Right-handed alpha
Helix 48	48	C	45	47	Right-handed 310
Helix 49	49	C	57	61	Right-handed 310
Helix 50	50	C	67	77	Right-handed alpha
Helix 51	51	C	89	96	Right-handed alpha
Helix 52	52	C	107	120	Right-handed alpha
Helix 53	53	C	120	126	Right-handed alpha
Helix 54	54	C	127	143	Right-handed alpha
Helix 55	55	C	150	154	Right-handed alpha
Helix 56	56	C	156	168	Right-handed alpha
Helix 57	57	C	170	172	Right-handed 310
Helix 58	58	C	173	186	Right-handed alpha
Helix 59	59	C	192	214	Right-handed alpha
Helix 60	60	C	218	225	Right-handed alpha
Helix 61	61	C	234	251	Right-handed alpha
Helix 62	62	C	252	266	Right-handed alpha
Helix 63	63	C	267	277	Right-handed alpha
Helix 64	64	C	280	292	Right-handed alpha
Helix 65	65	C	321	328	Right-handed 310
Helix 66	66	C	359	378	Right-handed alpha
Helix 67	67	C	407	411	Right-handed 310
Helix 68	68	D	19	23	Right-handed 310
Helix 69	69	D	33	36	Right-handed 310
Helix 70	70	D	37	43	Right-handed alpha
Helix 71	71	D	44	47	Right-handed 310
Helix 72	72	D	57	61	Right-handed 310
Helix 73	73	D	67	77	Right-handed alpha
Helix 74	74	D	89	96	Right-handed alpha
Helix 75	75	D	108	120	Right-handed alpha
Helix 76	76	D	120	143	Right-handed alpha
Helix 77	77	D	150	154	Right-handed alpha
Helix 78	78	D	156	168	Right-handed alpha
Helix 79	79	D	170	172	Right-handed 310
Helix 80	80	D	173	186	Right-handed alpha
Helix 81	81	D	192	214	Right-handed alpha
Helix 82	82	D	218	225	Right-handed alpha
Helix 83	83	D	234	250	Right-handed alpha
Helix 84	84	D	252	265	Right-handed alpha
Helix 85	85	D	267	277	Right-handed alpha
Helix 86	86	D	280	292	Right-handed alpha
Helix 87	87	D	359	378	Right-handed alpha
Helix 88	88	D	407	411	Right-handed 310

There are 20 sheets in PDB entry 1J51. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	62	65	anti-parallel
Strand 3	A	317	320	parallel
Strand 4	A	297	301	anti-parallel
Strand 5	A	81	82	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	149	first strand
Strand 2	A	403	405	anti-parallel
Strand 3	A	382	383	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	231	232	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	310	312	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	398	399	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	62	65	anti-parallel
Strand 3	B	317	320	parallel
Strand 4	B	297	301	anti-parallel
Strand 5	B	81	82	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	149	first strand
Strand 2	B	403	405	anti-parallel
Strand 3	B	382	383	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	231	232	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	307	first strand
Strand 2	B	310	312	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	398	399	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	62	65	anti-parallel
Strand 3	C	317	320	parallel
Strand 4	C	297	301	anti-parallel
Strand 5	C	81	82	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	149	first strand
Strand 2	C	403	405	anti-parallel
Strand 3	C	382	383	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	228	first strand
Strand 2	C	231	232	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	307	first strand
Strand 2	C	310	312	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	398	399	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	62	65	anti-parallel
Strand 3	D	317	320	parallel
Strand 4	D	297	301	anti-parallel
Strand 5	D	81	82	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	149	first strand
Strand 2	D	403	405	anti-parallel
Strand 3	D	382	383	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	228	first strand
Strand 2	D	231	232	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	307	first strand
Strand 2	D	310	312	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	392	first strand
Strand 2	D	398	399	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1J51

Analysis of interatomic Contacts of Structural Units in PDB entry:
1J51