Analysis of interatomic Contacts of Structural Units in PDB entry:
1J58


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J58 entry

There is 1 chain in PDB entry 1J58 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8VAL 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1J58. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 31Right-handed alpha
Helix 2
2
A
31 36Right-handed alpha
Helix 3
3
A
51 55Right-handed 310
Helix 4
4
A
161 163Right-handed 310
Helix 5
5
A
168 174Right-handed alpha
Helix 6
6
A
176 185Right-handed alpha
Helix 7
7
A
188 192Right-handed 310
Helix 8
8
A
209 214Right-handed alpha
Helix 9
9
A
231 233Right-handed 310
Helix 10
10
A
345 351Right-handed alpha
Helix 11
11
A
353 362Right-handed alpha
Helix 12
12
A
364 369Right-handed alpha
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There are 4 sheets in PDB entry 1J58. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
15 16anti-parallel
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There are 15 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
63 68anti-parallel
Strand 3
A
80 86anti-parallel
Strand 4
A
140 155anti-parallel
Strand 5
A
91 97anti-parallel
Strand 6
A
201 202anti-parallel
Strand 7
A
91 97anti-parallel
Strand 8
A
165 167anti-parallel
Strand 9
A
91 97anti-parallel
Strand 10
A
140 155anti-parallel
Strand 11
A
101 115anti-parallel
Strand 12
A
121 127anti-parallel
Strand 13
A
101 115anti-parallel
Strand 14
A
130 134anti-parallel
Strand 15
A
227 229anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
241 246anti-parallel
Strand 3
A
258 264anti-parallel
Strand 4
A
329 335anti-parallel
Strand 5
A
280 286anti-parallel
Strand 6
A
310 313anti-parallel
Strand 7
A
49 50anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
378 379anti-parallel
Strand 3
A
319 323anti-parallel
Strand 4
A
288 296anti-parallel
Strand 5
A
299 306anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il