Analysis of interatomic Contacts of Structural Units in PDB entry:
1J59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J59 entry

There are 6 chains in PDB entry 1J59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G -5 C 9
D
 A 10 G 26
E
 G 27 C 14
F
 A 13 G -4
A
 PRO 9GLY 207
B
 PRO 9VAL 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1J59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 17Right-handed alpha
Helix 2
2
A
99 106Right-handed alpha
Helix 3
3
A
110 136Right-handed 310
Helix 4
4
A
139 152Right-handed alpha
Helix 5
5
A
169 176Right-handed alpha
Helix 6
6
A
180 192Right-handed alpha
Helix 7
7
B
10 16Right-handed alpha
Helix 8
8
B
74 76Right-handed 310
Helix 9
9
B
99 108Right-handed alpha
Helix 10
10
B
110 136Right-handed alpha
Helix 11
11
B
139 150Right-handed alpha
Helix 12
12
B
169 176Right-handed alpha
Helix 13
13
B
180 191Right-handed alpha
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There are 6 sheets in PDB entry 1J59. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
58 64anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
201 204anti-parallel
Strand 3
A
196 198anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 23first strand
Strand 2
B
92 98anti-parallel
Strand 3
B
38 44anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
58 65anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 199first strand
Strand 2
B
201 204anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
93 98anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il