Analysis of interatomic Contacts of Structural Units in PDB entry:
1J5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J5S entry

There are 3 chains in PDB entry 1J5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0PHE 450
B
 MET 1PHE 450
C
 MET 1PHE 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 1J5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 22Right-handed alpha
Helix 2
2
A
34 41Right-handed alpha
Helix 3
3
A
46 52Right-handed alpha
Helix 4
4
A
55 65Right-handed alpha
Helix 5
5
A
68 72Right-handed 310
Helix 6
6
A
77 89Right-handed alpha
Helix 7
7
A
90 93Right-handed 310
Helix 8
8
A
95 109Right-handed alpha
Helix 9
9
A
116 131Right-handed alpha
Helix 10
10
A
135 143Right-handed alpha
Helix 11
11
A
158 168Right-handed alpha
Helix 12
12
A
179 184Right-handed alpha
Helix 13
13
A
189 202Right-handed alpha
Helix 14
14
A
207 224Right-handed alpha
Helix 15
15
A
243 255Right-handed alpha
Helix 16
16
A
261 284Right-handed alpha
Helix 17
17
A
298 305Right-handed alpha
Helix 18
18
A
319 331Right-handed alpha
Helix 19
19
A
343 345Right-handed 310
Helix 20
20
A
346 357Right-handed alpha
Helix 21
21
A
371 384Right-handed alpha
Helix 22
22
A
387 391Right-handed 310
Helix 23
23
A
402 425Right-handed alpha
Helix 24
24
A
429 442Right-handed alpha
Helix 25
25
A
442 450Right-handed alpha
Helix 26
26
B
11 22Right-handed alpha
Helix 27
27
B
34 41Right-handed alpha
Helix 28
28
B
46 52Right-handed alpha
Helix 29
29
B
55 65Right-handed alpha
Helix 30
30
B
68 72Right-handed 310
Helix 31
31
B
77 89Right-handed alpha
Helix 32
32
B
90 93Right-handed 310
Helix 33
33
B
95 109Right-handed alpha
Helix 34
34
B
116 131Right-handed alpha
Helix 35
35
B
135 143Right-handed alpha
Helix 36
36
B
158 168Right-handed alpha
Helix 37
37
B
179 184Right-handed alpha
Helix 38
38
B
189 202Right-handed alpha
Helix 39
39
B
207 224Right-handed alpha
Helix 40
40
B
243 255Right-handed alpha
Helix 41
41
B
261 284Right-handed alpha
Helix 42
42
B
298 305Right-handed alpha
Helix 43
43
B
319 331Right-handed alpha
Helix 44
44
B
343 345Right-handed 310
Helix 45
45
B
346 357Right-handed alpha
Helix 46
46
B
371 384Right-handed alpha
Helix 47
47
B
387 391Right-handed 310
Helix 48
48
B
402 425Right-handed alpha
Helix 49
49
B
429 442Right-handed alpha
Helix 50
50
B
442 450Right-handed alpha
Helix 51
51
C
11 22Right-handed alpha
Helix 52
52
C
34 41Right-handed alpha
Helix 53
53
C
46 52Right-handed alpha
Helix 54
54
C
55 65Right-handed alpha
Helix 55
55
C
68 72Right-handed 310
Helix 56
56
C
77 89Right-handed alpha
Helix 57
57
C
90 93Right-handed 310
Helix 58
58
C
95 109Right-handed alpha
Helix 59
59
C
116 131Right-handed alpha
Helix 60
60
C
135 143Right-handed alpha
Helix 61
61
C
158 168Right-handed alpha
Helix 62
62
C
179 184Right-handed alpha
Helix 63
63
C
189 202Right-handed alpha
Helix 64
64
C
207 224Right-handed alpha
Helix 65
65
C
243 255Right-handed alpha
Helix 66
66
C
261 282Right-handed alpha
Helix 67
67
C
298 305Right-handed alpha
Helix 68
68
C
319 331Right-handed alpha
Helix 69
69
C
343 345Right-handed 310
Helix 70
70
C
346 357Right-handed alpha
Helix 71
71
C
371 384Right-handed alpha
Helix 72
72
C
387 391Right-handed 310
Helix 73
73
C
402 425Right-handed alpha
Helix 74
74
C
429 442Right-handed alpha
Helix 75
75
C
442 450Right-handed alpha
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There are 9 sheets in PDB entry 1J5S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
145 149parallel
Strand 3
A
172 174parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 234first strand
Strand 2
A
286 291parallel
Strand 3
A
337 341parallel
Strand 4
A
360 362parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
313 314anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
145 149parallel
Strand 3
B
172 174parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
286 291parallel
Strand 3
B
337 341parallel
Strand 4
B
360 362parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 294first strand
Strand 2
B
313 314anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 28first strand
Strand 2
C
145 149parallel
Strand 3
C
172 174parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
286 291parallel
Strand 3
C
337 341parallel
Strand 4
C
360 362parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
293 294first strand
Strand 2
C
313 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il