Analysis of interatomic Contacts of Structural Units in PDB entry:
1J5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J5T entry

There is 1 chain in PDB entry 1J5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3GLU 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1J5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 14Right-handed alpha
Helix 2
2
A
41 50Right-handed alpha
Helix 3
3
A
68 79Right-handed alpha
Helix 4
4
A
91 101Right-handed alpha
Helix 5
5
A
111 113Right-handed 310
Helix 6
6
A
114 127Right-handed alpha
Helix 7
7
A
138 149Right-handed alpha
Helix 8
8
A
163 175Right-handed alpha
Helix 9
9
A
176 178Right-handed 310
Helix 10
10
A
192 194Right-handed 310
Helix 11
11
A
195 200Right-handed alpha
Helix 12
12
A
209 214Right-handed alpha
Helix 13
13
A
217 228Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1J5T.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 26first strand
Strand 2
A
55 59parallel
Strand 3
A
83 86parallel
Strand 4
A
105 109parallel
Strand 5
A
131 136parallel
Strand 6
A
153 156parallel
Strand 7
A
183 187parallel
Strand 8
A
205 208parallel
Strand 9
A
21 26parallel
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