Analysis of interatomic Contacts of Structural Units in PDB entry:
1J5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J5W entry

There are 2 chains in PDB entry 1J5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASN 281
B
 MSE 1ALA 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1J5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 17Right-handed alpha
Helix 2
2
A
31 34Right-handed 310
Helix 3
3
A
35 40Right-handed alpha
Helix 4
4
A
41 44Right-handed 310
Helix 5
5
A
87 99Right-handed alpha
Helix 6
6
A
118 121Right-handed 310
Helix 7
7
A
161 170Right-handed alpha
Helix 8
8
A
173 176Right-handed 310
Helix 9
9
A
185 202Right-handed alpha
Helix 10
10
A
205 226Right-handed alpha
Helix 11
11
A
228 249Right-handed alpha
Helix 12
12
A
253 280Right-handed alpha
Helix 13
13
B
2 16Right-handed alpha
Helix 14
14
B
31 34Right-handed 310
Helix 15
15
B
35 40Right-handed alpha
Helix 16
16
B
41 44Right-handed 310
Helix 17
17
B
59 62Right-handed 310
Helix 18
18
B
87 100Right-handed alpha
Helix 19
19
B
118 121Right-handed 310
Helix 20
20
B
161 170Right-handed alpha
Helix 21
21
B
173 177Right-handed 310
Helix 22
22
B
184 203Right-handed alpha
Helix 23
23
B
205 225Right-handed alpha
Helix 24
24
B
228 249Right-handed alpha
Helix 25
25
B
253 280Right-handed alpha
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There are 5 sheets in PDB entry 1J5W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
48 57parallel
Strand 3
A
73 82anti-parallel
Strand 4
A
155 160anti-parallel
Strand 5
A
134 144anti-parallel
Strand 6
A
122 131anti-parallel
Strand 7
A
108 113anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
48 57parallel
Strand 3
A
73 82anti-parallel
Strand 4
A
155 160anti-parallel
Strand 5
A
134 144anti-parallel
Strand 6
A
122 131anti-parallel
Strand 7
A
116 117anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
183 184anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
48 57parallel
Strand 3
B
73 82anti-parallel
Strand 4
B
155 160anti-parallel
Strand 5
B
135 144anti-parallel
Strand 6
B
122 131anti-parallel
Strand 7
B
108 112anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
48 57parallel
Strand 3
B
73 82anti-parallel
Strand 4
B
155 160anti-parallel
Strand 5
B
135 144anti-parallel
Strand 6
B
122 131anti-parallel
Strand 7
B
115 117anti-parallel
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