Analysis of interatomic Contacts of Structural Units in PDB entry:
1J5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J5X entry

There is 1 chain in PDB entry 1J5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1J5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
14 22Right-handed alpha
Helix 3
3
A
23 26Right-handed 310
Helix 4
4
A
49 67Right-handed alpha
Helix 5
5
A
75 80Right-handed alpha
Helix 6
6
A
101 114Right-handed alpha
Helix 7
7
A
127 133Right-handed alpha
Helix 8
8
A
149 168Right-handed alpha
Helix 9
9
A
171 194Right-handed alpha
Helix 10
10
A
195 195Right-handed 310
Helix 11
11
A
196 200Right-handed 310
Helix 12
12
A
209 227Right-handed alpha
Helix 13
13
A
234 240Right-handed 310
Helix 14
14
A
241 246Right-handed 310
Helix 15
15
A
260 274Right-handed alpha
Helix 16
16
A
292 299Right-handed 310
Helix 17
17
A
300 315Right-handed alpha
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There are 2 sheets in PDB entry 1J5X. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
42 47parallel
Strand 3
A
90 95parallel
Strand 4
A
116 122parallel
Strand 5
A
135 138parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 233first strand
Strand 2
A
202 206parallel
Strand 3
A
250 255parallel
Strand 4
A
277 281parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il