Analysis of interatomic Contacts of Structural Units in PDB entry:
1J6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J6T entry

There are 2 chains in PDB entry 1J6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 4ARG 147
B
MET 301GLU 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1J6T. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
8 10Right-handed 310
Helix 2
2
A
20 35Right-handed alpha
Helix 3
3
A
41 53Right-handed alpha
Helix 4
4
A
67 74Right-handed 310
Helix 5
5
A
106 109Right-handed 310
Helix 6
6
A
110 122Right-handed alpha
Helix 7
7
A
124 134Right-handed alpha
Helix 8
8
A
136 145Right-handed alpha
Helix 9
9
B
315 328Right-handed alpha
Helix 10
10
B
346 351Right-handed alpha
Helix 11
11
B
369 384Right-handed alpha
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There are 2 sheets in PDB entry 1J6T. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
12 13first strand
Strand 2
A
78 89parallel
Strand 3
A
97 105anti-parallel
Strand 4
A
61 62parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
302 307first strand
Strand 2
B
360 366anti-parallel
Strand 3
B
332 337anti-parallel
Strand 4
B
340 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il