Analysis of interatomic Contacts of Structural Units in PDB entry:
1J6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J6U entry

There is 1 chain in PDB entry 1J6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LYS 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1J6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
35 44Right-handed alpha
Helix 3
3
A
73 82Right-handed alpha
Helix 4
4
A
89 101Right-handed alpha
Helix 5
5
A
112 127Right-handed alpha
Helix 6
6
A
162 168Right-handed 310
Helix 7
7
A
182 187Right-handed 310
Helix 8
8
A
189 203Right-handed alpha
Helix 9
9
A
216 220Right-handed 310
Helix 10
10
A
263 280Right-handed alpha
Helix 11
11
A
283 294Right-handed alpha
Helix 12
12
A
321 336Right-handed alpha
Helix 13
13
A
358 365Right-handed alpha
Helix 14
14
A
387 398Right-handed alpha
Helix 15
15
A
407 409Right-handed 310
Helix 16
16
A
410 415Right-handed alpha
Helix 17
17
A
430 446Right-handed alpha
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There are 4 sheets in PDB entry 1J6U. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
26 30parallel
Strand 3
A
2 6parallel
Strand 4
A
62 65parallel
Strand 5
A
86 88parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
132 134anti-parallel
Strand 3
A
154 158parallel
Strand 4
A
104 108parallel
Strand 5
A
172 175parallel
Strand 6
A
206 210parallel
Strand 7
A
222 224parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 238first strand
Strand 2
A
243 249anti-parallel
Strand 3
A
252 259anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 307first strand
Strand 2
A
312 317anti-parallel
Strand 3
A
421 426parallel
Strand 4
A
340 345parallel
Strand 5
A
369 372parallel
Strand 6
A
402 404parallel
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