Analysis of interatomic Contacts of Structural Units in PDB entry:
1J72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J72 entry

There is 1 chain in PDB entry 1J72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11LYS 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1J72. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
70 88Right-handed alpha
Helix 2
2
A
103 108Right-handed alpha
Helix 3
3
A
155 159Right-handed 310
Helix 4
4
A
182 198Right-handed alpha
Helix 5
5
A
216 224Right-handed alpha
Helix 6
6
A
272 276Right-handed 310
Helix 7
7
A
287 289Right-handed 310
Helix 8
8
A
301 320Right-handed alpha
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There are 4 sheets in PDB entry 1J72. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
20 26anti-parallel
Strand 3
A
47 53anti-parallel
Strand 4
A
59 65anti-parallel
Strand 5
A
93 98parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
115 117parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 211first strand
Strand 2
A
172 177parallel
Strand 3
A
164 169anti-parallel
Strand 4
A
134 142anti-parallel
Strand 5
A
148 152anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 211first strand
Strand 2
A
172 177parallel
Strand 3
A
164 169anti-parallel
Strand 4
A
134 142anti-parallel
Strand 5
A
261 266parallel
Strand 6
A
249 254anti-parallel
Strand 7
A
281 285anti-parallel
Strand 8
A
291 296anti-parallel
Strand 9
A
326 331parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il