Analysis of interatomic Contacts of Structural Units in PDB entry:
1J78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J78 entry

There are 2 chains in PDB entry 1J78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 13ILE 457
B
 ARG 3ASN 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 1J78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 20Right-handed alpha
Helix 2
2
A
21 36Right-handed alpha
Helix 3
3
A
40 57Right-handed alpha
Helix 4
4
A
68 78Right-handed alpha
Helix 5
5
A
91 96Right-handed alpha
Helix 6
6
A
124 135Right-handed alpha
Helix 7
7
A
135 151Right-handed alpha
Helix 8
8
A
155 174Right-handed alpha
Helix 9
9
A
178 211Right-handed alpha
Helix 10
10
A
211 227Right-handed alpha
Helix 11
11
A
231 250Right-handed alpha
Helix 12
12
A
257 274Right-handed alpha
Helix 13
13
A
277 284Right-handed alpha
Helix 14
14
A
288 298Right-handed alpha
Helix 15
15
A
315 320Right-handed 310
Helix 16
16
A
324 336Right-handed alpha
Helix 17
17
A
341 358Right-handed alpha
Helix 18
18
A
364 391Right-handed alpha
Helix 19
19
A
398 414Right-handed alpha
Helix 20
20
A
418 437Right-handed alpha
Helix 21
21
A
442 455Right-handed alpha
Helix 22
22
B
8 20Right-handed alpha
Helix 23
23
B
20 36Right-handed alpha
Helix 24
24
B
40 57Right-handed alpha
Helix 25
25
B
69 80Right-handed alpha
Helix 26
26
B
92 96Right-handed 310
Helix 27
27
B
105 109Right-handed 310
Helix 28
28
B
124 135Right-handed alpha
Helix 29
29
B
135 151Right-handed alpha
Helix 30
30
B
155 174Right-handed alpha
Helix 31
31
B
178 211Right-handed alpha
Helix 32
32
B
211 227Right-handed alpha
Helix 33
33
B
231 250Right-handed alpha
Helix 34
34
B
256 274Right-handed alpha
Helix 35
35
B
277 284Right-handed alpha
Helix 36
36
B
288 298Right-handed alpha
Helix 37
37
B
315 320Right-handed 310
Helix 38
38
B
324 338Right-handed alpha
Helix 39
39
B
341 358Right-handed alpha
Helix 40
40
B
364 392Right-handed alpha
Helix 41
41
B
398 414Right-handed alpha
Helix 42
42
B
418 437Right-handed alpha
Helix 43
43
B
442 455Right-handed alpha
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There are no sheets in PDB entry 1J78
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