Analysis of interatomic Contacts of Structural Units in PDB entry:
1J7N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J7N entry

There are 2 chains in PDB entry 1J7N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 27ILE 773
B
 GLU 27SER 776
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 83 helices in PDB entry 1J7N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 43Right-handed alpha
Helix 2
2
A
53 65Right-handed alpha
Helix 3
3
A
67 77Right-handed alpha
Helix 4
4
A
87 91Right-handed 310
Helix 5
5
A
91 95Right-handed 310
Helix 6
6
A
98 101Right-handed 310
Helix 7
7
A
115 117Right-handed 310
Helix 8
8
A
140 158Right-handed alpha
Helix 9
9
A
159 164Right-handed 310
Helix 10
10
A
167 179Right-handed alpha
Helix 11
11
A
183 190Right-handed alpha
Helix 12
12
A
191 196Right-handed alpha
Helix 13
13
A
202 208Right-handed alpha
Helix 14
14
A
209 226Right-handed alpha
Helix 15
15
A
226 237Right-handed alpha
Helix 16
16
A
237 250Right-handed alpha
Helix 17
17
A
250 261Right-handed alpha
Helix 18
18
A
263 278Right-handed alpha
Helix 19
19
A
278 284Right-handed alpha
Helix 20
20
A
286 298Right-handed alpha
Helix 21
21
A
303 309Right-handed alpha
Helix 22
22
A
313 321Right-handed alpha
Helix 23
23
A
323 327Right-handed 310
Helix 24
24
A
331 343Right-handed alpha
Helix 25
25
A
372 383Right-handed alpha
Helix 26
26
A
387 396Right-handed alpha
Helix 27
27
A
405 423Right-handed alpha
Helix 28
28
A
442 446Right-handed 310
Helix 29
29
A
447 452Right-handed alpha
Helix 30
30
A
464 473Right-handed alpha
Helix 31
31
A
551 574Right-handed alpha
Helix 32
32
A
591 610Right-handed alpha
Helix 33
33
A
611 625Right-handed alpha
Helix 34
34
A
635 639Right-handed 310
Helix 35
35
A
642 646Right-handed 310
Helix 36
36
A
648 652Right-handed 310
Helix 37
37
A
679 699Right-handed alpha
Helix 38
38
A
711 721Right-handed alpha
Helix 39
39
A
728 731Right-handed 310
Helix 40
40
A
732 745Right-handed alpha
Helix 41
41
A
748 759Right-handed alpha
Helix 42
42
A
759 770Right-handed alpha
Helix 43
43
B
28 43Right-handed alpha
Helix 44
44
B
53 64Right-handed alpha
Helix 45
45
B
67 77Right-handed alpha
Helix 46
46
B
87 91Right-handed 310
Helix 47
47
B
115 117Right-handed 310
Helix 48
48
B
135 140Right-handed alpha
Helix 49
49
B
140 158Right-handed alpha
Helix 50
50
B
159 164Right-handed 310
Helix 51
51
B
167 179Right-handed alpha
Helix 52
52
B
183 190Right-handed alpha
Helix 53
53
B
191 196Right-handed alpha
Helix 54
54
B
202 209Right-handed alpha
Helix 55
55
B
209 226Right-handed alpha
Helix 56
56
B
226 237Right-handed alpha
Helix 57
57
B
237 250Right-handed alpha
Helix 58
58
B
251 261Right-handed alpha
Helix 59
59
B
263 278Right-handed alpha
Helix 60
60
B
278 284Right-handed alpha
Helix 61
61
B
286 298Right-handed alpha
Helix 62
62
B
303 310Right-handed alpha
Helix 63
63
B
312 320Right-handed alpha
Helix 64
64
B
323 327Right-handed 310
Helix 65
65
B
331 347Right-handed alpha
Helix 66
66
B
371 384Right-handed alpha
Helix 67
67
B
387 396Right-handed alpha
Helix 68
68
B
405 423Right-handed alpha
Helix 69
69
B
442 446Right-handed 310
Helix 70
70
B
447 452Right-handed alpha
Helix 71
71
B
464 474Right-handed alpha
Helix 72
72
B
551 574Right-handed alpha
Helix 73
73
B
591 610Right-handed alpha
Helix 74
74
B
611 624Right-handed alpha
Helix 75
75
B
635 638Right-handed 310
Helix 76
76
B
639 644Right-handed alpha
Helix 77
77
B
679 701Right-handed alpha
Helix 78
78
B
707 710Right-handed 310
Helix 79
79
B
711 722Right-handed alpha
Helix 80
80
B
727 731Right-handed 310
Helix 81
81
B
732 745Right-handed alpha
Helix 82
82
B
748 759Right-handed alpha
Helix 83
83
B
759 776Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1J7N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
80 84parallel
Strand 3
A
128 132parallel
Strand 4
A
119 122anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 441first strand
Strand 2
A
499 504anti-parallel
Strand 3
A
540 550parallel
Strand 4
A
525 537anti-parallel
Strand 5
A
477 480anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 487first strand
Strand 2
A
518 521anti-parallel
Strand 3
A
511 514anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
629 632parallel
Strand 3
A
665 669parallel
Strand 4
A
657 660anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
80 84parallel
Strand 3
B
128 132parallel
Strand 4
B
119 122anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 105first strand
Strand 2
B
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
436 441first strand
Strand 2
B
499 504anti-parallel
Strand 3
B
540 550parallel
Strand 4
B
525 537anti-parallel
Strand 5
B
477 480anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
485 487first strand
Strand 2
B
518 521anti-parallel
Strand 3
B
511 514anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
583 586first strand
Strand 2
B
629 632parallel
Strand 3
B
665 669parallel
Strand 4
B
657 660anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il