Analysis of interatomic Contacts of Structural Units in PDB entry:
1J7U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J7U entry

There are 2 chains in PDB entry 1J7U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PHE 264
B
 ALA 2PHE 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1J7U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 14Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
56 67Right-handed alpha
Helix 4
4
A
98 102Right-handed alpha
Helix 5
5
A
107 123Right-handed alpha
Helix 6
6
A
135 149Right-handed alpha
Helix 7
7
A
155 160Right-handed 310
Helix 8
8
A
167 178Right-handed alpha
Helix 9
9
A
217 232Right-handed alpha
Helix 10
10
A
235 246Right-handed alpha
Helix 11
11
A
250 261Right-handed alpha
Helix 12
12
A
262 264Right-handed 310
Helix 13
13
B
7 15Right-handed alpha
Helix 14
14
B
47 51Right-handed 310
Helix 15
15
B
56 67Right-handed alpha
Helix 16
16
B
98 103Right-handed alpha
Helix 17
17
B
107 125Right-handed alpha
Helix 18
18
B
135 149Right-handed alpha
Helix 19
19
B
167 178Right-handed alpha
Helix 20
20
B
217 232Right-handed alpha
Helix 21
21
B
235 246Right-handed alpha
Helix 22
22
B
250 261Right-handed alpha
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There are 6 sheets in PDB entry 1J7U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
30 35anti-parallel
Strand 3
A
40 46anti-parallel
Strand 4
A
85 91anti-parallel
Strand 5
A
76 82anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
196 198anti-parallel
Strand 3
A
203 206anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
213 216anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 21first strand
Strand 2
B
30 35anti-parallel
Strand 3
B
40 46anti-parallel
Strand 4
B
85 91anti-parallel
Strand 5
B
76 82anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
196 199anti-parallel
Strand 3
B
202 206anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 187first strand
Strand 2
B
213 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il