Analysis of interatomic Contacts of Structural Units in PDB entry:
1J7X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J7X entry

There is 1 chain in PDB entry 1J7X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ALA 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1J7X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 20Right-handed alpha
Helix 2
2
A
22 24Right-handed 310
Helix 3
3
A
25 33Right-handed alpha
Helix 4
4
A
34 36Right-handed 310
Helix 5
5
A
43 60Right-handed alpha
Helix 6
6
A
70 72Right-handed 310
Helix 7
7
A
81 85Right-handed 310
Helix 8
8
A
88 100Right-handed alpha
Helix 9
9
A
119 127Right-handed alpha
Helix 10
10
A
126 134Right-handed alpha
Helix 11
11
A
134 139Right-handed alpha
Helix 12
12
A
158 165Right-handed alpha
Helix 13
13
A
216 228Right-handed alpha
Helix 14
14
A
284 286Right-handed 310
Helix 15
15
A
287 298Right-handed alpha
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There are 3 sheets in PDB entry 1J7X. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
255 260anti-parallel
Strand 3
A
245 249anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
109 113anti-parallel
Strand 3
A
143 147parallel
Strand 4
A
205 210parallel
Strand 5
A
232 235parallel
Strand 6
A
281 282parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
174 180anti-parallel
Strand 3
A
262 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il