Analysis of interatomic Contacts of Structural Units in PDB entry:
1J83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J83 entry

There are 2 chains in PDB entry 1J83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1027LYS 1206
B
 GLN 2027LYS 2206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1J83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1086 1090Right-handed 310
Helix 2
2
A
1145 1149Right-handed 310
Helix 3
3
A
1168 1176Right-handed alpha
Helix 4
4
B
2086 2090Right-handed 310
Helix 5
5
B
2145 2149Right-handed 310
Helix 6
6
B
2168 2176Right-handed alpha
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There are 6 sheets in PDB entry 1J83. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1142 1144first strand
Strand 2
A
1122 1130anti-parallel
Strand 3
A
1182 1192anti-parallel
Strand 4
A
1091 1094anti-parallel
Strand 5
A
1050 1051anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1142 1144first strand
Strand 2
A
1122 1130anti-parallel
Strand 3
A
1182 1192anti-parallel
Strand 4
A
1102 1103anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1061 1065first strand
Strand 2
A
1068 1072anti-parallel
Strand 3
A
1196 1205anti-parallel
Strand 4
A
1109 1116anti-parallel
Strand 5
A
1157 1164anti-parallel
Strand 6
A
1150 1151anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2142 2144first strand
Strand 2
B
2122 2130anti-parallel
Strand 3
B
2182 2192anti-parallel
Strand 4
B
2091 2094anti-parallel
Strand 5
B
2050 2051anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2142 2144first strand
Strand 2
B
2122 2130anti-parallel
Strand 3
B
2182 2192anti-parallel
Strand 4
B
2102 2103anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2061 2065first strand
Strand 2
B
2068 2072anti-parallel
Strand 3
B
2196 2205anti-parallel
Strand 4
B
2109 2116anti-parallel
Strand 5
B
2157 2164anti-parallel
Strand 6
B
2150 2151anti-parallel
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