Analysis of interatomic Contacts of Structural Units in PDB entry:
1J85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J85 entry

There is 1 chain in PDB entry 1J85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1J85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 26Right-handed alpha
Helix 2
2
A
41 46Right-handed alpha
Helix 3
3
A
50 54Right-handed 310
Helix 4
4
A
62 71Right-handed alpha
Helix 5
5
A
107 112Right-handed alpha
Helix 6
6
A
113 114Right-handed 310
Helix 7
7
A
115 117Right-handed 310
Helix 8
8
A
132 148Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1J85.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
28 32parallel
Strand 3
A
3 7parallel
Strand 4
A
95 99parallel
Strand 5
A
74 78parallel
Strand 6
A
119 120parallel
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