Analysis of interatomic Contacts of Structural Units in PDB entry:
1J8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J8F entry

There are 3 chains in PDB entry 1J8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34SER 356
B
 GLY 34SER 356
C
 GLN 54SER 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1J8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 45Right-handed alpha
Helix 2
2
A
63 73Right-handed alpha
Helix 3
3
A
85 92Right-handed 310
Helix 4
4
A
114 119Right-handed 310
Helix 5
5
A
120 127Right-handed alpha
Helix 6
6
A
128 139Right-handed alpha
Helix 7
7
A
146 158Right-handed alpha
Helix 8
8
A
171 176Right-handed alpha
Helix 9
9
A
179 181Right-handed 310
Helix 10
10
A
205 215Right-handed alpha
Helix 11
11
A
240 250Right-handed alpha
Helix 12
12
A
251 253Right-handed 310
Helix 13
13
A
266 274Right-handed alpha
Helix 14
14
A
294 305Right-handed alpha
Helix 15
15
A
323 335Right-handed alpha
Helix 16
16
A
337 355Right-handed alpha
Helix 17
17
B
34 45Right-handed alpha
Helix 18
18
B
63 73Right-handed alpha
Helix 19
19
B
85 92Right-handed 310
Helix 20
20
B
104 111Right-handed 310
Helix 21
21
B
114 119Right-handed 310
Helix 22
22
B
120 127Right-handed alpha
Helix 23
23
B
128 139Right-handed alpha
Helix 24
24
B
146 158Right-handed alpha
Helix 25
25
B
171 176Right-handed alpha
Helix 26
26
B
179 181Right-handed 310
Helix 27
27
B
206 215Right-handed alpha
Helix 28
28
B
241 254Right-handed alpha
Helix 29
29
B
266 274Right-handed alpha
Helix 30
30
B
294 304Right-handed alpha
Helix 31
31
B
323 335Right-handed alpha
Helix 32
32
B
337 355Right-handed alpha
Helix 33
33
C
63 72Right-handed alpha
Helix 34
34
C
85 92Right-handed 310
Helix 35
35
C
101 108Right-handed alpha
Helix 36
36
C
109 111Right-handed 310
Helix 37
37
C
114 119Right-handed 310
Helix 38
38
C
120 127Right-handed alpha
Helix 39
39
C
128 139Right-handed alpha
Helix 40
40
C
146 158Right-handed alpha
Helix 41
41
C
171 176Right-handed alpha
Helix 42
42
C
179 181Right-handed 310
Helix 43
43
C
205 214Right-handed alpha
Helix 44
44
C
241 248Right-handed alpha
Helix 45
45
C
269 274Right-handed alpha
Helix 46
46
C
294 304Right-handed alpha
Helix 47
47
C
323 335Right-handed alpha
Helix 48
48
C
337 355Right-handed alpha
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There are 6 sheets in PDB entry 1J8F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
161 166parallel
Strand 3
A
79 83parallel
Strand 4
A
256 260parallel
Strand 5
A
282 286parallel
Strand 6
A
317 321parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
188 195anti-parallel
Strand 3
A
228 232anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 185first strand
Strand 2
B
161 166parallel
Strand 3
B
79 83parallel
Strand 4
B
256 260parallel
Strand 5
B
282 286parallel
Strand 6
B
317 321parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
188 195anti-parallel
Strand 3
B
228 232anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 185first strand
Strand 2
C
161 166parallel
Strand 3
C
79 83parallel
Strand 4
C
256 260parallel
Strand 5
C
282 286parallel
Strand 6
C
317 321parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
203 204first strand
Strand 2
C
188 195anti-parallel
Strand 3
C
228 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il