Analysis of interatomic Contacts of Structural Units in PDB entry:
1J8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J8J entry

There is 1 chain in PDB entry 1J8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1J8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 55Right-handed 310
Helix 2
2
A
59 63Right-handed 310
Helix 3
3
A
108 112Right-handed 310
Helix 4
4
A
113 118Right-handed alpha
Helix 5
5
A
128 132Right-handed 310
Helix 6
6
A
138 146Right-handed alpha
Helix 7
7
A
223 231Right-handed alpha
Helix 8
8
A
269 274Right-handed alpha
Helix 9
9
A
302 307Right-handed alpha
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There are 6 sheets in PDB entry 1J8J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
28 34parallel
Strand 3
A
15 21anti-parallel
Strand 4
A
6 11anti-parallel
Strand 5
A
166 168anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
96 107parallel
Strand 3
A
81 93anti-parallel
Strand 4
A
72 76anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
309 314anti-parallel
Strand 3
A
319 325anti-parallel
Strand 4
A
178 186anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 200first strand
Strand 2
A
205 213anti-parallel
Strand 3
A
298 301parallel
Strand 4
A
220 222anti-parallel
Strand 5
A
289 291parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
284 286anti-parallel
Strand 4
A
275 276anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 260first strand
Strand 2
A
265 268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il