Analysis of interatomic Contacts of Structural Units in PDB entry:
1J8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J8Y entry

There is 1 chain in PDB entry 1J8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 LEU 3HIS 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1J8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
F
3 16Right-handed alpha
Helix 2
2
F
20 39Right-handed alpha
Helix 3
3
F
42 60Right-handed alpha
Helix 4
4
F
67 84Right-handed alpha
Helix 5
5
F
113 125Right-handed alpha
Helix 6
6
F
138 153Right-handed alpha
Helix 7
7
F
164 179Right-handed alpha
Helix 8
8
F
196 212Right-handed alpha
Helix 9
9
F
223 227Right-handed 310
Helix 10
10
F
228 239Right-handed alpha
Helix 11
11
F
254 264Right-handed alpha
Helix 12
12
F
285 292Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1J8Y.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
156 157first strand
Strand 2
F
129 133parallel
Strand 3
F
183 187parallel
Strand 4
F
99 104parallel
Strand 5
F
215 221parallel
Strand 6
F
242 247parallel
Strand 7
F
269 273parallel
Strand 8
F
281 283anti-parallel
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