Analysis of interatomic Contacts of Structural Units in PDB entry:
1J93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J93 entry

There is 1 chain in PDB entry 1J93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10TYR 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1J93. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 20Right-handed alpha
Helix 2
2
A
39 47Right-handed alpha
Helix 3
3
A
57 73Right-handed alpha
Helix 4
4
A
84 91Right-handed 310
Helix 5
5
A
110 117Right-handed alpha
Helix 6
6
A
121 126Right-handed alpha
Helix 7
7
A
126 141Right-handed alpha
Helix 8
8
A
152 163Right-handed alpha
Helix 9
9
A
169 179Right-handed alpha
Helix 10
10
A
179 204Right-handed alpha
Helix 11
11
A
214 219Right-handed 310
Helix 12
12
A
220 228Right-handed alpha
Helix 13
13
A
228 243Right-handed alpha
Helix 14
14
A
258 266Right-handed 310
Helix 15
15
A
277 285Right-handed alpha
Helix 16
16
A
296 302Right-handed 310
Helix 17
17
A
303 319Right-handed alpha
Helix 18
18
A
336 349Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1J93. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
145 151parallel
Strand 3
A
208 212parallel
Strand 4
A
248 251parallel
Strand 5
A
269 271parallel
Strand 6
A
290 292parallel
Strand 7
A
323 324parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
101 104anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il