Analysis of interatomic Contacts of Structural Units in PDB entry:
1J97


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J97 entry

There are 4 chains in PDB entry 1J97 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2PHE 10
A
 PHE 12LYS 211
B
 LYS 503PHE 510
B
 PHE 512LYS 711
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1J97. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 29Right-handed alpha
Helix 2
2
A
31 44Right-handed alpha
Helix 3
3
A
48 59Right-handed alpha
Helix 4
4
A
64 74Right-handed alpha
Helix 5
5
A
80 91Right-handed alpha
Helix 6
6
A
103 114Right-handed alpha
Helix 7
7
A
142 156Right-handed alpha
Helix 8
8
A
158 160Right-handed 310
Helix 9
9
A
168 170Right-handed 310
Helix 10
10
A
171 178Right-handed alpha
Helix 11
11
A
187 192Right-handed alpha
Helix 12
12
A
202 210Right-handed 310
Helix 13
13
B
520 529Right-handed alpha
Helix 14
14
B
531 544Right-handed alpha
Helix 15
15
B
548 559Right-handed alpha
Helix 16
16
B
564 574Right-handed alpha
Helix 17
17
B
580 591Right-handed alpha
Helix 18
18
B
603 614Right-handed alpha
Helix 19
19
B
642 656Right-handed alpha
Helix 20
20
B
658 660Right-handed 310
Helix 21
21
B
668 670Right-handed 310
Helix 22
22
B
671 678Right-handed alpha
Helix 23
23
B
687 692Right-handed alpha
Helix 24
24
B
702 710Right-handed 310
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There are 2 sheets in PDB entry 1J97. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 135first strand
Strand 2
A
117 126anti-parallel
Strand 3
A
94 102parallel
Strand 4
A
7 10parallel
Strand 5
A
162 166parallel
Strand 6
A
180 184parallel
Strand 7
A
196 198parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
629 635first strand
Strand 2
B
617 626anti-parallel
Strand 3
B
593 602parallel
Strand 4
B
506 510parallel
Strand 5
B
662 666parallel
Strand 6
B
680 684parallel
Strand 7
B
696 698parallel
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