Analysis of interatomic Contacts of Structural Units in PDB entry:
1J9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J9C entry

There are 3 chains in PDB entry 1J9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
 SER 1MET 210
L
 ASP 48GLU 142
H
 ILE 16PRO 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1J9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
T
59 64Right-handed alpha
Helix 2
2
T
65 67Right-handed 310
Helix 3
3
T
101 106Right-handed alpha
Helix 4
4
T
143 147Right-handed alpha
Helix 5
5
L
49 53Right-handed 310
Helix 6
6
L
94 98Right-handed 310
Helix 7
7
H
55 60Right-handed 310
Helix 8
8
H
125 129Right-handed alpha
Helix 9
9
H
129 129Right-handed 310
Helix 10
10
H
164 170Right-handed alpha
Helix 11
11
H
234 244Right-handed alpha
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There are 10 sheets in PDB entry 1J9C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
10 17first strand
Strand 2
T
20 26anti-parallel
Strand 3
T
56 58anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
46 52first strand
Strand 2
T
32 40anti-parallel
Strand 3
T
71 79anti-parallel
Strand 4
T
93 96anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
117 118first strand
Strand 2
T
122 124anti-parallel
Strand 3
T
177 178anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
131 136first strand
Strand 2
T
139 142anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
166 168first strand
Strand 2
T
152 157anti-parallel
Strand 3
T
188 192anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
76 77first strand
Strand 2
L
83 84anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
101 105first strand
Strand 2
L
108 113anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
118 120first strand
Strand 2
L
127 129anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
20 21first strand
Strand 2
H
156 163anti-parallel
Strand 3
H
180 183anti-parallel
Strand 4
H
226 230anti-parallel
Strand 5
H
206 216anti-parallel
Strand 6
H
198 203anti-parallel
Strand 7
H
135 140anti-parallel
Strand 8
H
156 163anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
251 252first strand
Strand 2
H
81 89parallel
Strand 3
H
104 108anti-parallel
Strand 4
H
51 54anti-parallel
Strand 5
H
39 48anti-parallel
Strand 6
H
30 35anti-parallel
Strand 7
H
64 68anti-parallel
Strand 8
H
81 89anti-parallel
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