Analysis of interatomic Contacts of Structural Units in PDB entry:
1JA0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JA0 entry

There are 2 chains in PDB entry 1JA0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 63VAL 676
B
 ILE 242VAL 676
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1JA0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
68 75Right-handed alpha
Helix 2
2
A
89 102Right-handed alpha
Helix 3
3
A
103 106Right-handed 310
Helix 4
4
A
113 117Right-handed 310
Helix 5
5
A
118 128Right-handed 310
Helix 6
6
A
149 159Right-handed alpha
Helix 7
7
A
182 195Right-handed alpha
Helix 8
8
A
211 231Right-handed alpha
Helix 9
9
A
327 338Right-handed alpha
Helix 10
10
A
367 374Right-handed alpha
Helix 11
11
A
382 391Right-handed alpha
Helix 12
12
A
395 404Right-handed alpha
Helix 13
13
A
410 420Right-handed alpha
Helix 14
14
A
426 434Right-handed alpha
Helix 15
15
A
440 448Right-handed alpha
Helix 16
16
A
488 497Right-handed alpha
Helix 17
17
A
533 536Right-handed 310
Helix 18
18
A
537 553Right-handed alpha
Helix 19
19
A
575 582Right-handed alpha
Helix 20
20
A
604 612Right-handed alpha
Helix 21
21
A
612 621Right-handed alpha
Helix 22
22
A
635 651Right-handed alpha
Helix 23
23
A
655 669Right-handed alpha
Helix 24
24
B
254 258Right-handed 310
Helix 25
25
B
327 338Right-handed alpha
Helix 26
26
B
367 374Right-handed alpha
Helix 27
27
B
382 391Right-handed alpha
Helix 28
28
B
395 407Right-handed alpha
Helix 29
29
B
412 420Right-handed alpha
Helix 30
30
B
426 434Right-handed alpha
Helix 31
31
B
440 448Right-handed alpha
Helix 32
32
B
488 496Right-handed alpha
Helix 33
33
B
533 536Right-handed 310
Helix 34
34
B
537 553Right-handed alpha
Helix 35
35
B
575 585Right-handed alpha
Helix 36
36
B
604 612Right-handed alpha
Helix 37
37
B
612 622Right-handed alpha
Helix 38
38
B
635 652Right-handed alpha
Helix 39
39
B
655 668Right-handed alpha
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There are 11 sheets in PDB entry 1JA0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 207first strand
Strand 2
A
167 174parallel
Strand 3
A
132 140parallel
Strand 4
A
80 85parallel
Strand 5
A
111 112parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 207first strand
Strand 2
A
167 174parallel
Strand 3
A
132 140parallel
Strand 4
A
144 145anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
348 350anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 457first strand
Strand 2
A
319 322anti-parallel
Strand 3
A
508 514anti-parallel
Strand 4
A
282 291anti-parallel
Strand 5
A
300 306anti-parallel
Strand 6
A
468 474anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 346first strand
Strand 2
A
365 366anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 479first strand
Strand 2
A
485 487anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 595first strand
Strand 2
A
560 566parallel
Strand 3
A
528 531parallel
Strand 4
A
626 630parallel
Strand 5
A
672 675parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 249first strand
Strand 2
B
345 350anti-parallel
Strand 3
B
365 366anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 457first strand
Strand 2
B
319 322anti-parallel
Strand 3
B
508 514anti-parallel
Strand 4
B
282 291anti-parallel
Strand 5
B
300 306anti-parallel
Strand 6
B
468 474anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
477 479first strand
Strand 2
B
485 487anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 595first strand
Strand 2
B
560 566parallel
Strand 3
B
528 531parallel
Strand 4
B
626 630parallel
Strand 5
B
672 675parallel
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