Analysis of interatomic Contacts of Structural Units in PDB entry:
1JAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JAE entry

There is 1 chain in PDB entry 1JAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1JAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
21 31Right-handed alpha
Helix 2
H2
A
56 60Right-handed 310
Helix 3
H3
A
74 87Right-handed alpha
Helix 4
H4
A
142 147Right-handed alpha
Helix 5
H5
A
161 177Right-handed 310
Helix 6
H6
A
192 201Right-handed alpha
Helix 7
H7
A
233 236Right-handed 310
Helix 8
H8
A
245 256Right-handed alpha
Helix 9
H9
A
261 266Right-handed 310
Helix 10
H10
A
287 292Right-handed alpha
Helix 11
H11
A
302 314Right-handed 310
Helix 12
H12
A
365 376Right-handed alpha
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There are 4 sheets in PDB entry 1JAE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 324first strand
Strand 2
A
11 16parallel
Strand 3
A
37 42parallel
Strand 4
A
90 95parallel
Strand 5
A
181 185parallel
Strand 6
A
218 222parallel
Strand 7
A
241 243parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 397first strand
Strand 2
A
401 406anti-parallel
Strand 3
A
462 466anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 416first strand
Strand 2
A
449 454anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 425first strand
Strand 2
A
441 444anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il