Analysis of interatomic Contacts of Structural Units in PDB entry:
1JAL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JAL entry

There are 2 chains in PDB entry 1JAL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 363
B
 MET 1VAL 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1JAL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 25Right-handed alpha
Helix 2
2
A
48 59Right-handed alpha
Helix 3
3
A
79 84Right-handed alpha
Helix 4
4
A
85 87Right-handed 310
Helix 5
5
A
89 96Right-handed alpha
Helix 6
6
A
120 152Right-handed alpha
Helix 7
7
A
155 174Right-handed alpha
Helix 8
8
A
177 181Right-handed 310
Helix 9
9
A
184 192Right-handed alpha
Helix 10
10
A
193 195Right-handed 310
Helix 11
11
A
216 229Right-handed alpha
Helix 12
12
A
237 244Right-handed alpha
Helix 13
13
A
245 247Right-handed 310
Helix 14
14
A
252 257Right-handed alpha
Helix 15
15
A
266 277Right-handed alpha
Helix 16
16
A
300 307Right-handed alpha
Helix 17
17
A
308 308Right-handed 310
Helix 18
18
A
309 310Right-handed 310
Helix 19
19
A
311 316Right-handed alpha
Helix 20
20
A
323 330Right-handed alpha
Helix 21
21
A
332 339Right-handed alpha
Helix 22
22
B
14 25Right-handed alpha
Helix 23
23
B
49 59Right-handed alpha
Helix 24
24
B
89 94Right-handed alpha
Helix 25
25
B
95 97Right-handed 310
Helix 26
26
B
123 152Right-handed alpha
Helix 27
27
B
156 174Right-handed alpha
Helix 28
28
B
177 181Right-handed 310
Helix 29
29
B
184 190Right-handed alpha
Helix 30
30
B
191 195Right-handed 310
Helix 31
31
B
196 200Right-handed 310
Helix 32
32
B
216 230Right-handed alpha
Helix 33
33
B
237 246Right-handed alpha
Helix 34
34
B
249 258Right-handed alpha
Helix 35
35
B
265 277Right-handed alpha
Helix 36
36
B
300 307Right-handed alpha
Helix 37
37
B
308 308Right-handed 310
Helix 38
38
B
309 310Right-handed 310
Helix 39
39
B
311 316Right-handed alpha
Helix 40
40
B
323 330Right-handed alpha
Helix 41
41
B
333 339Right-handed alpha
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There are 6 sheets in PDB entry 1JAL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
67 72anti-parallel
Strand 3
A
4 8parallel
Strand 4
A
99 105parallel
Strand 5
A
202 207parallel
Strand 6
A
232 236parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
289 296parallel
Strand 3
A
279 285anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
318 322anti-parallel
Strand 3
A
356 360anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
67 72anti-parallel
Strand 3
B
4 8parallel
Strand 4
B
99 105parallel
Strand 5
B
202 207parallel
Strand 6
B
232 236parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
289 296parallel
Strand 3
B
279 284anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 345first strand
Strand 2
B
318 322anti-parallel
Strand 3
B
356 360anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il