Analysis of interatomic Contacts of Structural Units in PDB entry:
1JAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JAY entry

There are 2 chains in PDB entry 1JAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 212
B
 MET 1LEU 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1JAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 22Right-handed alpha
Helix 2
2
A
33 49Right-handed alpha
Helix 3
3
A
58 65Right-handed alpha
Helix 4
4
A
73 84Right-handed alpha
Helix 5
5
A
84 89Right-handed alpha
Helix 6
6
A
114 124Right-handed alpha
Helix 7
7
A
136 142Right-handed alpha
Helix 8
8
A
157 171Right-handed alpha
Helix 9
9
A
181 183Right-handed 310
Helix 10
10
A
184 190Right-handed alpha
Helix 11
11
A
190 203Right-handed alpha
Helix 12
12
B
10 23Right-handed alpha
Helix 13
13
B
33 49Right-handed alpha
Helix 14
14
B
58 64Right-handed alpha
Helix 15
15
B
73 84Right-handed alpha
Helix 16
16
B
84 89Right-handed alpha
Helix 17
17
B
114 124Right-handed alpha
Helix 18
18
B
136 142Right-handed alpha
Helix 19
19
B
157 171Right-handed alpha
Helix 20
20
B
181 183Right-handed 310
Helix 21
21
B
184 190Right-handed alpha
Helix 22
22
B
190 203Right-handed alpha
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There are 5 sheets in PDB entry 1JAY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
26 31parallel
Strand 3
A
2 6parallel
Strand 4
A
67 70parallel
Strand 5
A
92 95parallel
Strand 6
A
128 130parallel
Strand 7
A
149 155anti-parallel
Strand 8
A
174 180parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
108 109anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
B
209 211anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 57first strand
Strand 2
B
26 31parallel
Strand 3
B
2 6parallel
Strand 4
B
67 70parallel
Strand 5
B
92 95parallel
Strand 6
B
128 130parallel
Strand 7
B
149 155anti-parallel
Strand 8
B
174 180parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
107 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il