Analysis of interatomic Contacts of Structural Units in PDB entry:
1JAZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JAZ entry

There are 2 chains in PDB entry 1JAZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1TYR 326
B
 LEU 1TYR 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1JAZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 45Right-handed 310
Helix 2
2
A
57 61Right-handed 310
Helix 3
3
A
62 77Right-handed alpha
Helix 4
4
A
78 80Right-handed 310
Helix 5
5
A
91 103Right-handed alpha
Helix 6
6
A
124 138Right-handed alpha
Helix 7
7
A
139 142Right-handed 310
Helix 8
8
A
197 201Right-handed 310
Helix 9
9
A
225 234Right-handed alpha
Helix 10
10
A
250 263Right-handed alpha
Helix 11
11
A
285 290Right-handed alpha
Helix 12
12
A
298 310Right-handed alpha
Helix 13
13
A
315 326Right-handed alpha
Helix 14
14
B
39 45Right-handed 310
Helix 15
15
B
57 61Right-handed 310
Helix 16
16
B
62 77Right-handed alpha
Helix 17
17
B
78 80Right-handed 310
Helix 18
18
B
91 103Right-handed alpha
Helix 19
19
B
124 138Right-handed alpha
Helix 20
20
B
139 142Right-handed 310
Helix 21
21
B
197 201Right-handed 310
Helix 22
22
B
204 208Right-handed 310
Helix 23
23
B
225 234Right-handed alpha
Helix 24
24
B
250 263Right-handed alpha
Helix 25
25
B
285 290Right-handed alpha
Helix 26
26
B
298 310Right-handed alpha
Helix 27
27
B
315 326Right-handed alpha
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There are 6 sheets in PDB entry 1JAZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
3 8parallel
Strand 3
A
82 86parallel
Strand 4
A
109 112parallel
Strand 5
A
147 150parallel
Strand 6
A
153 156anti-parallel
Strand 7
A
180 183anti-parallel
Strand 8
A
186 189anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
171 173anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
238 243parallel
Strand 3
A
266 271parallel
Strand 4
A
292 293parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 52first strand
Strand 2
B
3 8parallel
Strand 3
B
82 86parallel
Strand 4
B
109 112parallel
Strand 5
B
147 150parallel
Strand 6
B
153 156anti-parallel
Strand 7
B
180 183anti-parallel
Strand 8
B
186 189anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
171 173anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 218first strand
Strand 2
B
238 243parallel
Strand 3
B
266 271parallel
Strand 4
B
291 293parallel
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