Analysis of interatomic Contacts of Structural Units in PDB entry:
1JB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JB9 entry

There is 1 chain in PDB entry 1JB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6TYR 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1JB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 19Right-handed 310
Helix 2
2
A
127 136Right-handed 310
Helix 3
3
A
132 140Right-handed alpha
Helix 4
4
A
177 189Right-handed alpha
Helix 5
5
A
209 213Right-handed 310
Helix 6
6
A
215 226Right-handed alpha
Helix 7
7
A
249 257Right-handed alpha
Helix 8
8
A
257 267Right-handed alpha
Helix 9
9
A
279 295Right-handed alpha
Helix 10
10
A
297 308Right-handed alpha
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There are 3 sheets in PDB entry 1JB9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
190 191parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
71 75anti-parallel
Strand 3
A
146 153anti-parallel
Strand 4
A
34 43anti-parallel
Strand 5
A
53 59anti-parallel
Strand 6
A
108 114anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 236first strand
Strand 2
A
205 207parallel
Strand 3
A
167 173parallel
Strand 4
A
270 276parallel
Strand 5
A
311 316parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il