Analysis of interatomic Contacts of Structural Units in PDB entry:
1JBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JBK entry

There is 1 chain in PDB entry 1JBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 157ARG 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1JBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
158 164Right-handed alpha
Helix 2
2
A
168 174Right-handed alpha
Helix 3
3
A
183 195Right-handed alpha
Helix 4
4
A
211 226Right-handed alpha
Helix 5
5
A
229 233Right-handed 310
Helix 6
6
A
241 247Right-handed alpha
Helix 7
7
A
251 269Right-handed alpha
Helix 8
8
A
280 284Right-handed 310
Helix 9
9
A
295 305Right-handed alpha
Helix 10
10
A
315 323Right-handed alpha
Helix 11
11
A
326 331Right-handed alpha
Helix 12
12
A
342 348Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1JBK.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
236 240anti-parallel
Strand 3
A
273 278parallel
Strand 4
A
310 314parallel
Strand 5
A
201 205parallel
Strand 6
A
333 337parallel
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